Gene detail information of Glyur000279s00013255.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58220.1 | 3.00E-105 | transthyretin-like protein |
| NR | XP_004510200.1 | 0 | PREDICTED: uric acid degradation bifunctional protein TTL-like isoform X1 [Cicer arietinum] |
| COG | YP_005006240.1 | 7.00E-32 | OHCU decarboxylase [Niastella koreensis GR20-10] |
| Swissprot | tr|Q9LVM5|TTHL_ARATH | 6.00E-130 | 5-hydroxyisourate hydrolase |
| trEMBL | tr|I1MM35|I1MM35_SOYBN | 0 | 5-hydroxyisourate hydrolase {ECO:0000256|RuleBase:RU004307} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00279 | 150326 | 154105 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13484 | TTHL | EC:3.5.2.17 4.1.1.97 | Purine metabolism | map00230 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000279s00013255.1 | PF09349.5 | OHCU_decarbox | 10 | 158 | 1.00E-32 |
| Glyur000279s00013255.1 | PF00576.16 | Transthyretin | 214 | 333 | 6.80E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 49.660 |
| SRR1783600 | control | 49.903 |
| SRR1783602 | moderate drought stress | 70.487 |
| SRR1811619 | moderate drought stress | 70.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 67.470 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 66.967 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.525 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.427 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 65.580 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 64.486 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.399 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 45.352 |
| SRR2868004 | Drought Stress(Tissue:root) | 49.531 |
| SRR2967015 | Control (Tissue:root) | 49.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 20.143 |
| SRR9715740 | Leave | 27.130 |
| SRR9715741 | Leave | 28.106 |
| SRR9715739 | Root | 40.322 |
| SRR9715742 | Root | 36.155 |
| SRR9715743 | Root | 35.158 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.247 |
| SRR8749028 | MeJA induced 9h | 20.788 |
| SRR8749029 | MeJA induced 9h | 13.249 |
| SRR8749030 | Uninduced | 9.317 |
| SRR8749031 | Uninduced | 3.953 |
| SRR8749032 | Uninduced | 5.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 49.237 |
| SRR8400027 | Control-Root | 45.215 |