Gene detail information of Glyur000279s00013266.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G22400.13.00E-123PLAT/LH2 domain-containing lipoxygenase family protein
NRXP_003626860.10Lipoxygenase [Medicago truncatula]
Swissprottr|Q9LUW0|LOX5_ARATH7.00E-143Linoleate 9S-lipoxygenase 5, chloroplastic
trEMBLtr|G7LEB2|G7LEB2_MEDTR0Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00279214348218111+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00454LOX2S EC:1.13.11.12 Linoleic acid metabolism map00591
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005515  protein binding

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000279s00013266.1PF01477.18PLAT621695.40E-11
Glyur000279s00013266.1PF00305.14Lipoxygenase1815747.10E-118


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.142
SRR1783600control0.134
SRR1783602moderate drought stress0.152
SRR1811619moderate drought stress0.150

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.183
DRR006520Root Summer glycyrrhizin high producing strain0.173
DRR006521Root Winter glycyrrhizin high producing strain0.064
DRR006522Root Winter glycyrrhizin high producing strain0.021
DRR006523Root Summer glycyrrhizin low producing strain0.074
DRR006524Root Summer glycyrrhizin low producing strain0.186
DRR006525Leaf Summer glycyrrhizin high producing strain0.076
DRR006526Leaf Summer glycyrrhizin high producing strain0.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.250
SRR2868004Drought Stress(Tissue:root)0.181
SRR2967015Control (Tissue:root)0.233

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.290
SRR9715740Leave0.037
SRR9715741Leave0.109
SRR9715739Root0.000
SRR9715742Root0.036
SRR9715743Root0.202

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.002
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.007

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.351
SRR8400027Control-Root0.365

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved