Gene detail

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Gene detail information of Glyur000280s00015687.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13960.1	9.00E-34	growth-regulating factor 5
NR	XP_004512413.1	1.83E-171	PREDICTED: growth-regulating factor 5-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q6AWY4\|GRF5_ORYSJ	5.00E-48	Growth-regulating factor 5
trEMBL	tr\|G7K6W0\|G7K6W0_MEDTR	4.00E-171	Growth-regulating factor {ECO:0000313\|EMBL:AES95580.1}

Sequence

Transcript Sequence

>Glyur000280s00015687.1
CTCGTACGTAGTTTTACTGTTCTATCTACCAATATTAATCGAAAAGAAAAGAAAAATAATTATAAAAAAAAAGTTGAACCTCCCCACTGGTCAGCATTAGAGAGAGGGCGAGTTTCCTTTTAATTTAATCTCTACCACCAAATTCCATTACCAATGTTCAATGATGGCTGAAGAACTGCTTCTCCTTCTCCTTCTCCCACCACCATCACCACCCCCTTCTCTCTCCGTAACTTCACTCTAATGCAACTTTCCCTCTCCCAGATTCAACCTCTCACAACATTATTACCTTATTTTTATTATTTCTATTATTAAACTCACTCAAACTCCAACACCCCTCCAAAAAAAAAGAAAAGATGAGCGTTCCTCCGCCGCCGGTGATGTGGACGGCGACTCATCCACCACCGTTCACGGTGTCGCAGTGGCAGGAGCTGGAGCACCAAGCTCTCATCTTCAAGTACCTGAAAGCGGGTCTGTCGGTTCCCCCTGACCTCCTCTTACCCATTCGCAAGAGCCTCCAATTGATGTCTCACCCTTCTCTGGGTTACTATGGGAAGAAGATAGACCCTGAACCTGGAAGGTGTAGGAGAACCGATGGGAAAAAGTGGAGGTGTTCTAGGGATGCTCACCCTGACTCCAAGTACTGTGACCGCCACATGATACGACGCCGTTACCGTTCAAGAAAGCCTGTGGAATCTCAATCTCAAACTCAACCCTCTTCTACTTCCTCTTCCTCTTCACAACTTGCTTCCACCACAACCACAACAACTACTGCTGCTACCTCAGCTTCCTTCCACACACTCCCTTTGCACACCAATGGTACCAGGGAAGGTTTCAGTTTTACTCTTGGCGGCAACAACAACACCATANCTCAGATGGACCCTCTTCTTCTTCCCCTTCAGGGTTCTAAGAAACCTTACAGGTTTGGACTGAACTCCGAAGCAGATGAGCACAACGTCTTACAGAAAGATCTGGGAAGTGTGAAGTATCAAGGCTATGACTTTACTTCAGATGCCATGTGGTCTAACATGTCTCAGATTCCATCAAACACTGTTTCAGAATCAAGGGGTGGTTCTACTATTGCTGGCAACTACTTCCAACAACGAACAACGCGAGAAGCTGAGCTGTTTAATAACCTTGATGCTGCAAGGTCCAAGGAACTTGTCTTTAANGGCCAGTTAGGTTCAGCAGGTTGTTTGAAACAGGAATATCAGTCCCCTCAGTCTCTCTTCAGTGACTGGCACTGGAAGAAAGATTTAGGCTCCTCTACCATTGAGTATAGGCCAAACAAGGATTTTAATGGCAACCCAGATGTCAATGCTGATTCAAAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00280	49141	51994	+

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component GO:0005634 nucleus molecular_function GO:0005524 ATP binding GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000280s00015687.1	PF08880.6	QLQ	17	52	7.50E-15
Glyur000280s00015687.1	PF08879.5	WRC	70	114	2.30E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.059
SRR1783600	control	6.970
SRR1783602	moderate drought stress	13.694
SRR1811619	moderate drought stress	13.563

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.863
DRR006520	Root Summer glycyrrhizin high producing strain	3.002
DRR006521	Root Winter glycyrrhizin high producing strain	12.061
DRR006522	Root Winter glycyrrhizin high producing strain	11.780
DRR006523	Root Summer glycyrrhizin low producing strain	3.327
DRR006524	Root Summer glycyrrhizin low producing strain	2.922
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.161
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.927

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	9.458
SRR2868004	Drought Stress(Tissue:root)	9.493
SRR2967015	Control (Tissue:root)	11.943

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.847
SRR9715740	Leave	9.363
SRR9715741	Leave	9.184
SRR9715739	Root	1.322
SRR9715742	Root	2.720
SRR9715743	Root	2.208

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.812
SRR8749028	MeJA induced 9h	9.463
SRR8749029	MeJA induced 9h	5.976
SRR8749030	Uninduced	10.159
SRR8749031	Uninduced	9.525
SRR8749032	Uninduced	10.314

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	10.705
SRR8400027	Control-Root	9.304