Gene detail information of Glyur000280s00015704.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G45390.13.00E-95CLP protease P4
NRXP_004512394.12.83E-165PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic-like [Cicer arietinum]
COGYP_007101704.14.00E-66ATP-dependent Clp protease proteolytic subunit ClpP [Pseudanabaena sp. PCC 7367]
Swissprottr|Q94B60|CLPP4_ARATH5.00E-129ATP-dependent Clp protease proteolytic subunit 4, chloroplastic (Precursor)
trEMBLtr|I1J836|I1J836_SOYBN3.00E-158ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00280172945177780-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01358clpP, CLPP EC:3.4.21.92 Cell cycle - Caulobacter map04112
Longevity regulating pathway - wormmap04212


Gene Ontology

biological_process

GO:0006508  proteolysis


molecular_function

GO:0004252  serine-type endopeptidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000280s00015704.1PF00574.18CLP_protease982712.60E-65


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control66.514
SRR1783600control66.932
SRR1783602moderate drought stress45.774
SRR1811619moderate drought stress45.390

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain44.339
DRR006520Root Summer glycyrrhizin high producing strain43.654
DRR006521Root Winter glycyrrhizin high producing strain15.895
DRR006522Root Winter glycyrrhizin high producing strain14.856
DRR006523Root Summer glycyrrhizin low producing strain32.188
DRR006524Root Summer glycyrrhizin low producing strain32.284
DRR006525Leaf Summer glycyrrhizin high producing strain70.939
DRR006526Leaf Summer glycyrrhizin high producing strain69.139

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.915
SRR2868004Drought Stress(Tissue:root)29.191
SRR2967015Control (Tissue:root)27.877

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave41.847
SRR9715740Leave53.328
SRR9715741Leave35.910
SRR9715739Root18.930
SRR9715742Root26.122
SRR9715743Root21.951

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h37.093
SRR8749028MeJA induced 9h26.293
SRR8749029MeJA induced 9h26.853
SRR8749030Uninduced11.554
SRR8749031Uninduced6.932
SRR8749032Uninduced8.549

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.183
SRR8400027Control-Root45.083

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved