Gene detail information of Glyur000280s00015712.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10150.1 | 9.00E-17 | RING/U-box superfamily protein |
| NR | XP_003612592.1 | 1.83E-59 | RING finger family protein [Medicago truncatula] |
| Swissprot | tr|P0C041|ATL53_ARATH | 4.00E-21 | Putative RING-H2 finger protein ATL53 |
| trEMBL | tr|G7K6T0|G7K6T0_MEDTR | 7.00E-60 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AES95550.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00280 | 210328 | 210873 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000280s00015712.1 | PF13639.1 | zf-RING_2 | 94 | 137 | 2.00E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.280 |
| SRR1783600 | control | 0.231 |
| SRR1783602 | moderate drought stress | 0.073 |
| SRR1811619 | moderate drought stress | 0.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.543 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.253 |
| SRR2967015 | Control (Tissue:root) | 0.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.081 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.118 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.189 |
| SRR8749028 | MeJA induced 9h | 0.533 |
| SRR8749029 | MeJA induced 9h | 0.258 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.160 |
| SRR8400027 | Control-Root | 0.068 |