Gene detail information of Glyur000281s00018234.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26490.1 | 1.00E-173 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_003589296.1 | 0 | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 [Medicago truncatula] |
| COG | YP_007064977.1 | 3.00E-24 | WD-40 repeat-containing protein [Calothrix sp. PCC 7507] |
| Swissprot | tr|O24076|GBLP_MEDSA | 1.00E-14 | Guanine nucleotide-binding protein subunit beta-like protein |
| trEMBL | tr|G7I595|G7I595_MEDTR | 0 | Transducin/WD40 repeat protein {ECO:0000313|EMBL:AES59547.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00281 | 28728 | 32550 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000281s00018234.1 | PF00400.27 | WD40 | 115 | 141 | 0.013 |
| Glyur000281s00018234.1 | PF00400.27 | WD40 | 223 | 252 | 3.20E-07 |
| Glyur000281s00018234.1 | PF00400.27 | WD40 | 258 | 294 | 1.00E-07 |
| Glyur000281s00018234.1 | PF00400.27 | WD40 | 308 | 342 | 0.0094 |
| Glyur000281s00018234.1 | PF00400.27 | WD40 | 352 | 383 | 3.10E-05 |
| Glyur000281s00018234.1 | PF00400.27 | WD40 | 390 | 436 | 2.50E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.526 |
| SRR1783600 | control | 2.514 |
| SRR1783602 | moderate drought stress | 2.461 |
| SRR1811619 | moderate drought stress | 2.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.092 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.002 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.741 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.635 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.675 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.670 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.554 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.169 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.035 |
| SRR2967015 | Control (Tissue:root) | 4.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.097 |
| SRR9715740 | Leave | 0.643 |
| SRR9715741 | Leave | 1.149 |
| SRR9715739 | Root | 9.231 |
| SRR9715742 | Root | 4.545 |
| SRR9715743 | Root | 4.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.298 |
| SRR8749028 | MeJA induced 9h | 5.964 |
| SRR8749029 | MeJA induced 9h | 13.164 |
| SRR8749030 | Uninduced | 2.303 |
| SRR8749031 | Uninduced | 2.200 |
| SRR8749032 | Uninduced | 4.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.771 |
| SRR8400027 | Control-Root | 4.254 |