Gene detail information of Glyur000281s00018237.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33280.1 | 1.00E-41 | AP2/B3-like transcriptional factor family protein |
| NR | AFK42404.1 | 0 | unknown [Medicago truncatula] |
| Swissprot | tr|Q8RYD1|REM16_ARATH | 9.00E-47 | B3 domain-containing protein REM16 |
| trEMBL | tr|I3SQ62|I3SQ62_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK42404.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00281 | 65082 | 68903 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000281s00018237.1 | PF02362.16 | B3 | 35 | 113 | 2.30E-16 |
| Glyur000281s00018237.1 | PF02362.16 | B3 | 315 | 397 | 5.10E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.828 |
| SRR1783600 | control | 10.990 |
| SRR1783602 | moderate drought stress | 13.240 |
| SRR1811619 | moderate drought stress | 13.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.520 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.244 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.310 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.787 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.290 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.999 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.896 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 29.762 |
| SRR2868004 | Drought Stress(Tissue:root) | 27.293 |
| SRR2967015 | Control (Tissue:root) | 27.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.832 |
| SRR9715740 | Leave | 17.837 |
| SRR9715741 | Leave | 22.125 |
| SRR9715739 | Root | 19.409 |
| SRR9715742 | Root | 11.047 |
| SRR9715743 | Root | 14.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 125.782 |
| SRR8749028 | MeJA induced 9h | 60.430 |
| SRR8749029 | MeJA induced 9h | 74.906 |
| SRR8749030 | Uninduced | 22.328 |
| SRR8749031 | Uninduced | 16.835 |
| SRR8749032 | Uninduced | 25.701 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 31.151 |
| SRR8400027 | Control-Root | 29.961 |