Gene detail

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Gene detail information of Glyur000281s00018249.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G66850.1	2.00E-119	mitogen-activated protein kinase kinase kinase 5
NR	XP_003545300.1	0	PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Glycine max]
COG	YP_008089030.1	2.00E-33	Serine/threonine protein kinase [Chthonomonas calidirosea T49]
Swissprot	tr\|Q9CAD5\|YODA_ARATH	4.00E-98	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|K7M5K0\|K7M5K0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G08801.1}

Sequence

Transcript Sequence

>Glyur000281s00018249.1
ATGCCTCTCTCTCGCAAACCATTATCTTCTACTACGCCGCCGACAACAGGGACTACCAAGCAAAACGACGGCGATGGCAAAGCCCGTATTTCTGTTCCGACGTGGCAACCCATGACACCGAAAAACCGCAGCGACCTATTGCATTCCACTGAGTCATCATCATCATCATTATCTTCGTCTTCTTCTAAGTTTCCATGCTGGTCCTCGTGTTTCGTGCCGCAACCGCTTCGGGTTCCCGTGTCGCCGTTGACCCGGAGACCCCAGTCAACCATCCCCAATCCCTTTGAACATCTTCCGAGGAAGACATTGGATCGTGATGAAATGACAAAANCAAAACCAGCACACAAATTGGAAAGATCCACTTTAGATCCTACTCTTGCAAAATATTATAATCTTAGAGTTCGTATTCCACCTGCAAGGTCCATGACAGCCACAAGTGTAGTCACTGTTCATGTTACTAGTCCATGTAGAGCAAGCAATGTAAATTTCCTTGATCCTACCATCATCAATTTTCCTTTAGAAGCCAATGACAATTTGAAAATGCCACCATCTAAAATTCAAGAGGGATCGCACCNCCATAAATTTTTGTCTGTTTCTTGGCCTGAAAATGACCACGTTGATGTACATCCATTACCCCTTCCTCCTAGAGCTTCATCACCAGCTCAATTATCTATGCTGCATCAAGTAACAGAAATTCAGCATTCGGTGAAAGGTCGATGGCAGAAAGGAAAACTTATCGGANGCGGTACCTTTGGAAGTGTTTTTCATGCAACCAACCTAGAGACTGGAGCCTCATGTGCAATGAAGGAGGTCGATCTAATTCCTGATGATCCTACATCTGCTGAGTGCATTAAGCAACTAGAGCAGGAAATCAGGATTCTCCGTCAACTACACCACCCCAATATTGTGCAGTATTATGGAAGTGAAATGGTTGACAATCATTTGTACATATATATGGAGTATGTCCATCCCNGATCAATTAATAAATTTATGCGTGAAAATTGTGGAGCTATGACAGAATCCGTGGTTCGCAATTTTACAAGGCATATTCTCTCTGGATTGGCTTACTTACATAGTACCAAAACTATCCACAGAGATATCAAAGGTGCAAACTTGCTGGTTAATGAATCAGGCATTGTCAAGCTTGCAGATTTTGGGATGGCAAAAATTTTGACAGGGAATTCATATAAACTTTCTTTGAAGGGTAGTCCTTACTGGATGGCTCCAGAGGTCATAAAAGCTGCCATAAACAATGAATCCAATCCTGACCTTTTCATGGCCATTGATATATGGAGCTTAGGGTGCACCATCATTGAAATGCTGACAGGGAAACCTCCTTGGAGTGAATTTGAAGGGCCTTCAGCCATGTTCAAGGTACTGCTGCAACAGTCCCCACCTATACCTGAAACTTTGTCTTCAGTGGGAAAGGATTTCCTCCGGCAATGTTTCCNAAGGGACCCTGCAGATCGGCCATCCGCAGAAATGCTTCTTAAGCATGGCTTTGTGCAGAATTTGCATGGTCAAGATGTTCTAGATAATTCATCTAGTCCTAGTGACCCTACCAAAAATACATGTGACATTATGCCAGCCTCCATGAGAACAAGGATTCCTAACAAAATTCAGAAATTAATCAGTGATACTTCCCAACAAAATAATGCTGAGGAATCTAATCATATTGTAAAATATAGTCACTCTGATGTTCCAGGAGTTAGTATTCTTCAATCTTCCTTCAAACCGGGTACCTTCAATTACATGTCTGTTGCAAAGTCAAGAAACATACCCCACACTGTCATGAGAATGATCACCCACCTTTGAAGAGGTTATGCTTAAAAAATTTGAAGGATGCAGCATGCAGCTGGAAAGGGGATCATGGAGAATTAATTTTGCAAAAAAGAAAAAATCACTGGAGAATTAACAATAGTGGGGATTTAGAAGTTAGTTATTCATGATGGTTAGGAGCTTTAATAAATGAACTCAAAAACTGAGAGGTGAAAGATANGATAAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00281	139972	145304	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000281s00018249.1	PF00069.20	Pkinase	240	501	4.50E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.342
SRR1783600	control	0.299
SRR1783602	moderate drought stress	0.038
SRR1811619	moderate drought stress	0.057

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.694
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.609

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.161
SRR2868004	Drought Stress(Tissue:root)	0.226
SRR2967015	Control (Tissue:root)	0.114

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	29.302
SRR9715740	Leave	16.955
SRR9715741	Leave	35.386
SRR9715739	Root	0.117
SRR9715742	Root	0.443
SRR9715743	Root	0.475

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.114
SRR8749028	MeJA induced 9h	9.570
SRR8749029	MeJA induced 9h	24.537
SRR8749030	Uninduced	21.347
SRR8749031	Uninduced	57.766
SRR8749032	Uninduced	36.465

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.369
SRR8400027	Control-Root	0.281