Gene detail information of Glyur000281s00018254.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G67300.1 | 3.00E-44 | myb domain protein r1 |
| NR | KDP38397.1 | 7.49E-66 | hypothetical protein JCGZ_04322 [Jatropha curcas] |
| Swissprot | tr|Q9FDW1|MYB44_ARATH | 2.00E-51 | Transcription factor MYB44 |
| trEMBL | tr|A0A067KQI3|A0A067KQI3_JATCU | 3.00E-66 | Uncharacterized protein {ECO:0000313|EMBL:KDP38397.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00281 | 173170 | 177233 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000281s00018254.1 | PF13921.1 | Myb_DNA-bind_6 | 43 | 100 | 1.70E-13 |
| Glyur000281s00018254.1 | PF07816.6 | DUF1645 | 199 | 376 | 2.90E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.540 |
| SRR1783600 | control | 2.670 |
| SRR1783602 | moderate drought stress | 3.433 |
| SRR1811619 | moderate drought stress | 3.534 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.647 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.428 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.237 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.200 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 46.122 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 47.542 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.503 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 55.393 |
| SRR2868004 | Drought Stress(Tissue:root) | 182.350 |
| SRR2967015 | Control (Tissue:root) | 162.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 69.824 |
| SRR9715740 | Leave | 30.176 |
| SRR9715741 | Leave | 107.915 |
| SRR9715739 | Root | 7.635 |
| SRR9715742 | Root | 31.208 |
| SRR9715743 | Root | 27.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.651 |
| SRR8749028 | MeJA induced 9h | 41.617 |
| SRR8749029 | MeJA induced 9h | 32.556 |
| SRR8749030 | Uninduced | 168.110 |
| SRR8749031 | Uninduced | 171.853 |
| SRR8749032 | Uninduced | 122.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 38.433 |
| SRR8400027 | Control-Root | 34.081 |