Gene detail information of Glyur000283s00016952.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G43710.1 | 0 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
| NR | XP_006584560.1 | 0 | PREDICTED: uncharacterized protein LOC100792053 isoform X1 [Glycine max] |
| COG | YP_001865119.1 | 4.00E-100 | histidine decarboxylase [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q6ESZ9|SDC1_ORYSJ | 0 | Serine decarboxylase 1 |
| trEMBL | tr|K7L5G4|K7L5G4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G08130.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00283 | 113791 | 116681 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01590 | hdc, HDC | EC:4.1.1.22 | Histidine metabolism | map00340 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000283s00016952.1 | PF00282.14 | Pyridoxal_deC | 187 | 370 | 9.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.066 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.066 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.719 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.886 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.067 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.068 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.188 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.476 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.107 |
| SRR2967015 | Control (Tissue:root) | 0.445 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.220 |
| SRR9715740 | Leave | 5.457 |
| SRR9715741 | Leave | 4.391 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.152 |
| SRR9715743 | Root | 0.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.574 |
| SRR8400027 | Control-Root | 0.393 |