Gene detail information of Glyur000284s00027070.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G06290.15.00E-1112-cysteine peroxiredoxin B
NRADX30686.14.27E-1672-Cys peroxiredoxin [Caragana jubata]
COGYP_007108815.16.00E-106alkyl hydroperoxide reductase [Geitlerinema sp. PCC 7407]
Swissprottr|Q9C5R8|BAS1B_ARATH3.00E-1392-Cys peroxiredoxin BAS1-like, chloroplastic (Precursor)
trEMBLtr|F1C3E5|F1C3E5_9FABA2.00E-1672-Cys peroxiredoxin {ECO:0000313|EMBL:ADX30686.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002848789794154+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03386PRDX2_4, ahpC EC:1.11.1.15 Apoptosis - fly map04214


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016209  antioxidant activity

GO:0016491  oxidoreductase activity

GO:0051920  peroxiredoxin activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000284s00027070.1PF00578.16AhpC-TSA732065.00E-41
Glyur000284s00027070.1PF10417.41-cysPrx_C2272611.90E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.729
SRR1783600control19.808
SRR1783602moderate drought stress11.551
SRR1811619moderate drought stress11.645

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.410
DRR006520Root Summer glycyrrhizin high producing strain17.138
DRR006521Root Winter glycyrrhizin high producing strain3.352
DRR006522Root Winter glycyrrhizin high producing strain3.391
DRR006523Root Summer glycyrrhizin low producing strain12.141
DRR006524Root Summer glycyrrhizin low producing strain12.070
DRR006525Leaf Summer glycyrrhizin high producing strain90.154
DRR006526Leaf Summer glycyrrhizin high producing strain89.588

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.357
SRR2868004Drought Stress(Tissue:root)5.482
SRR2967015Control (Tissue:root)5.469

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.351
SRR9715740Leave33.597
SRR9715741Leave17.127
SRR9715739Root7.318
SRR9715742Root6.577
SRR9715743Root6.372

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.791
SRR8749028MeJA induced 9h3.108
SRR8749029MeJA induced 9h2.835
SRR8749030Uninduced1.224
SRR8749031Uninduced0.316
SRR8749032Uninduced0.926

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.720
SRR8400027Control-Root17.417

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved