Gene detail information of Glyur000286s00016498.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G28730.10high mobility group
NRXP_003517023.10PREDICTED: FACT complex subunit SSRP1-like [Glycine max]
Swissprottr|O04235|SSRP1_VICFA0FACT complex subunit SSRP1
trEMBLtr|I1J7R6|I1J7R6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G33240.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002866867075324-


Gene family

Gene familysubfamily
Transcription Factors FamilyHMG


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000286s00016498.1PF03531.9SSrecog742933.10E-104
Glyur000286s00016498.1PF08512.7Rtt1063494404.30E-22
Glyur000286s00016498.1PF00505.14HMG_box5576253.50E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.656
SRR1783600control17.287
SRR1783602moderate drought stress22.940
SRR1811619moderate drought stress22.749

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.132
DRR006520Root Summer glycyrrhizin high producing strain18.567
DRR006521Root Winter glycyrrhizin high producing strain15.644
DRR006522Root Winter glycyrrhizin high producing strain15.313
DRR006523Root Summer glycyrrhizin low producing strain26.094
DRR006524Root Summer glycyrrhizin low producing strain25.775
DRR006525Leaf Summer glycyrrhizin high producing strain14.530
DRR006526Leaf Summer glycyrrhizin high producing strain14.313

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.155
SRR2868004Drought Stress(Tissue:root)36.864
SRR2967015Control (Tissue:root)39.145

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.641
SRR9715740Leave34.537
SRR9715741Leave37.458
SRR9715739Root2.731
SRR9715742Root21.749
SRR9715743Root20.319

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.203
SRR8749028MeJA induced 9h23.924
SRR8749029MeJA induced 9h13.433
SRR8749030Uninduced7.260
SRR8749031Uninduced5.007
SRR8749032Uninduced4.494

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.860
SRR8400027Control-Root31.504

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved