Gene detail information of Glyur000286s00016502.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16750.1 | 7.00E-06 | Transducin family protein / WD-40 repeat family protein |
| NR | XP_004489379.1 | 0 | PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Cicer arietinum] |
| COG | YP_001658758.1 | 6.00E-13 | WD repeat-containing protein [Microcystis aeruginosa NIES-843] |
| Swissprot | tr|Q6S7B0|TAF5_ARATH | 2.00E-06 | Transcription initiation factor TFIID subunit 5 |
| trEMBL | tr|V7C1H4|V7C1H4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW23198.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00286 | 85517 | 91013 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000286s00016502.1 | PF00400.27 | WD40 | 152 | 184 | 9.30E-06 |
| Glyur000286s00016502.1 | PF00400.27 | WD40 | 190 | 229 | 1.60E-05 |
| Glyur000286s00016502.1 | PF00400.27 | WD40 | 242 | 278 | 5.60E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.403 |
| SRR1783600 | control | 5.729 |
| SRR1783602 | moderate drought stress | 7.709 |
| SRR1811619 | moderate drought stress | 7.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.018 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.121 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.959 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.027 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.632 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.383 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.403 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.959 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.924 |
| SRR2967015 | Control (Tissue:root) | 2.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.755 |
| SRR9715740 | Leave | 2.376 |
| SRR9715741 | Leave | 2.754 |
| SRR9715739 | Root | 1.941 |
| SRR9715742 | Root | 2.385 |
| SRR9715743 | Root | 1.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.090 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.219 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.040 |
| SRR8749032 | Uninduced | 0.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.821 |
| SRR8400027 | Control-Root | 3.385 |