Gene detail information of Glyur000286s00016503.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G49040.1 | 9.00E-10 | stomatal cytokinesis defective / SCD1 protein (SCD1) |
| NR | XP_004489379.1 | 0 | PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Cicer arietinum] |
| COG | YP_001658758.1 | 7.00E-18 | WD repeat-containing protein [Microcystis aeruginosa NIES-843] |
| Swissprot | tr|Q6S7B0|TAF5_ARATH | 7.00E-09 | Transcription initiation factor TFIID subunit 5 |
| trEMBL | tr|V7C1H4|V7C1H4_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW23198.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00286 | 94129 | 99510 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000286s00016503.1 | PF00646.28 | F-box | 16 | 59 | 0.0001 |
| Glyur000286s00016503.1 | PF00400.27 | WD40 | 132 | 168 | 0.0003 |
| Glyur000286s00016503.1 | PF00400.27 | WD40 | 171 | 213 | 3.40E-06 |
| Glyur000286s00016503.1 | PF00400.27 | WD40 | 226 | 262 | 2.20E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.210 |
| SRR1783600 | control | 4.531 |
| SRR1783602 | moderate drought stress | 5.002 |
| SRR1811619 | moderate drought stress | 5.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.814 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.081 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.704 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.736 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.306 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.434 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.857 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.857 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.122 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.791 |
| SRR2967015 | Control (Tissue:root) | 16.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.440 |
| SRR9715740 | Leave | 12.611 |
| SRR9715741 | Leave | 17.420 |
| SRR9715739 | Root | 5.124 |
| SRR9715742 | Root | 10.125 |
| SRR9715743 | Root | 8.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.820 |
| SRR8749028 | MeJA induced 9h | 18.584 |
| SRR8749029 | MeJA induced 9h | 13.600 |
| SRR8749030 | Uninduced | 18.011 |
| SRR8749031 | Uninduced | 6.287 |
| SRR8749032 | Uninduced | 9.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 16.907 |
| SRR8400027 | Control-Root | 14.794 |