Gene detail

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Gene detail information of Glyur000286s00016509.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15150.1	6.00E-57	homeobox 3
NR	XP_003543764.1	4.63E-139	PREDICTED: homeobox-leucine zipper protein HAT7-like [Glycine max]
Swissprot	tr\|Q00466\|HAT7_ARATH	1.00E-80	Homeobox-leucine zipper protein HAT7
trEMBL	tr\|I1LWJ5\|I1LWJ5_SOYBN	2.00E-139	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G05270.1}

Sequence

Transcript Sequence

>Glyur000286s00016509.1
TCACCATGAGAGTGAGAGCCAAACCATCCTTTGAAACCCACAAAGTGAAACCCTCTTAAAAACACACTAGAGAAAGAAGAAAAAAAGAAACACCCCTCTAATAAAGCTTCTAGCTTTTGCATGAATTATCATCATCACTACTCTTCATCTTCTGCTTCAACTTCAAATTCTACCATGGCCTTTCCACCTTCTCATCACACTTTCATCTTTCAAACCCATGAAGACCAAGACCACCTTCATTCAACTTCAACAACCTCTCTCAACACCTTCCCCTCTTTTCCACCTCATCAACAACAACACTTTCAAGGGGGTGGTGCAGCTTTCATGATGAAGAGATCGGTGTCATTTTCAGGCATAGAGAACAACAACAACAACAACAACAAGTGTGATCATGAATTATTGCATCATGGAGATGATGAGTTATCTGATGATGGGTCACTACAACTTGGGGAGAAGAAGAAGAGGCTGAGTTTGGAACAGGTGAAGGCACTTGAGAAGAGCTTTGAGGTTGGGAACAAGCTTGAGCCTGAGAGGAAAATGCAACTTGCTAAGGCACTGGGGCTACAACCTAGGCAGATTGCTATTTGGTTCCAAAACAGAAGGGCAAGGTGGAAAACCAAACAGCTTGAGAAGGAATATCAAGTCCTCAAGAAACAGTTTGAAGCTCTTAAGGCTGATAATGATACCCTTAAGGCTCAGAACCATAAACTACATGCAGAGCTACAAACTCTTAAAAGTAGGGACTGTTGTGAAGGAGGAACAACAATTAGCCTCAAAAAAGAAGCAGAGGGTTCATGGAGCAATGGAAGTACTGATAACAGCTCAGATATCAATTTGGACCTGTCAAGAACACCAGTGATGAACAGTCCTGTATCTTCTGATCAGAATGGTACTAAAATGCAGCTTCTATCAGCCTCCCTAAAGCCAATTACCAGCATGACACAGTTACTCCAATGCTCATCATCAAGATCAGATCTTCAAGAGGAAAGCTTCTGCAACATGTTTCACAATATTGATGATCAGCAGCAGAGTTTTTGGCCCTGGCCTGAACAGAACCACACCCATTTCCATTGAAACTATACTCAAAAACTGATTTTGGATCATCAATTATTTGAGGGGGAAAAAGTAAGAAGAAAGTTTTCATTAGACTTAGCTCTCAACCACATTTTTTATTACTATTTCTTTTTTGTCTACCAATTAAGTTTTTTCAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00286	183354	186192	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0003677 DNA binding GO:0003700 transcription factor activity, sequence-specific DNA binding GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000286s00016509.1	PF00046.24	Homeobox	113	165	7.60E-16
Glyur000286s00016509.1	PF02183.13	HALZ	167	207	9.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.316
SRR1783600	control	18.208
SRR1783602	moderate drought stress	22.578
SRR1811619	moderate drought stress	22.482

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.829
DRR006520	Root Summer glycyrrhizin high producing strain	10.576
DRR006521	Root Winter glycyrrhizin high producing strain	0.293
DRR006522	Root Winter glycyrrhizin high producing strain	0.357
DRR006523	Root Summer glycyrrhizin low producing strain	40.814
DRR006524	Root Summer glycyrrhizin low producing strain	41.198
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.460
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.459

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	38.652
SRR2868004	Drought Stress(Tissue:root)	26.429
SRR2967015	Control (Tissue:root)	33.920

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.528
SRR9715740	Leave	0.083
SRR9715741	Leave	0.889
SRR9715739	Root	2.046
SRR9715742	Root	7.515
SRR9715743	Root	7.774

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.094

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	23.685
SRR8400027	Control-Root	26.873