Gene detail

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Gene detail information of Glyur000288s00019856.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	6.00E-162	Leucine-rich repeat protein kinase family protein
NR	XP_004512338.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cicer arietinum]
COG	YP_004775215.1	1.00E-51	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|G7KAT7\|G7KAT7_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES94850.1}

Sequence

Transcript Sequence

>Glyur000288s00019856.1
ATGTGGTTTGGCCCAAACACAATTGTGGCCTTGGCATTCAAAAACCAGCAGACCGATCATTTGGCATTGCTCAAATTCAAGGAATCAATATCCACTGACCCATATGGAGTTCTAGAATTTTGGAATAGTTCTACCCACTTCTGCAAGTGGCATGGAATCACATGCAGTCCCATGCATCAAAGAGTTGCAGAGTTGGACCTAGAAGGATATCAGTTGCATGGATCCATATCTCCCCATGTTGGCAATCTCTCTTTTCTGAGAAACCTCTTCCTTGCAAATAATAGCTTGTTTGGAGAAATCCCACAAGAGCTAGGTCGGTTGTTACGATTGCAGCAACTCGACCTCACCAATAATTCGTTTGCAGGAGAAATTCCTACAAACGTGACAAATTGCTCTAATCTTAAGGACTTGCTCTTGTTCGGGAACAAGTTGATTGGGAAAATACCAATCGGGTTTGGCTCTCTTCAAAAGCTTCAAATGTTGGGCCTTGCGAAAAACAATTTAACTGGAAGAGTGCCGCCATTCATAGGGAATCTTTCATCCTTAATAGGTCTCTCGGTTTCTTATAACAAGTTAGAGGGAGATATTCCACAAGAAATATGTCGCCTCAAAAACTTGACAATGTTATATATGTCTAACAACAAACTATCTGGCAATTTTCCTTCTTGTCTTTATAACATGTCATCTCTAACTATGGTCTCAGCTCCAGTGAATCACTTTGATGGCTCTCTTCCACCCAACATGTTCCACAACCTACCCAATCTCCAATTTTTTGCAATTGGCGAGAATCAAATCTCAGGTCCAATCCCCACTTCCGTTGCAAATGCTTCTACCCTTATAGTGTTCGATATCAGGGAAAACCATTTCGTCGGACAAGTTCCAAGTCTAAGAAAGCTACACCATCTCAGGAAGCTAAGTGTGGGATTCAACAATTTAGGTGACAATTCAACTGAGGATTTGGAGTTTTTAAAATCATTGACAAATTGTACAAAACTGCAAGTGTTTTCTATAGCCTATAATAATTTTGGAGGTAGTTTGCCAAATTTCGTAGGCAATTTATCCACCCAACTTAGTTTACTATATATTGGGGGTAACCAAATATCAGGAAAAATTCCCATAGAATTAGGAAATCTAATTGGCTTAACTCTCCTTGGGATGGAACAAAACTACTTTGAAGGAATTATTCCATCAACTTTTGGAAAGTTTCAAAAGATGCAACTGTTGGCTATGAGTCAAAACAAACTGTCAGGAGATATACCAGCCTACATAGGCAACCTCAGTCAATTGTTTCGCTTGGATTTAGGACAAAATATGTTAGAAGGAAATATTCCTCCAAATATAGGAAACTACCAAAAGTTACAATACCTAAACCTTTCACACAACAATCTTACAGGAACCATACCTTTAGAGGTTTTTACTCTTTCCTCTTTATCAAACTTATTGGACTTGTCACAAAACTCATTGAGTGGTAGCTTACCGAGAGAGGTGAGTACGCTAAAAAATATTGATTGGCTAGATGTCTCTGAGAATCATCTGTCTGGGGACATTCCTGGAACCATCGGTGAATGCATAAGCTTAGAATACCTTCAATTGCAAGGGAACTCCTTCTACGGAACCATACCGTCCTCTTTGGCTTCTCTCAAAGGTCTTCGATATTTAGACCTGTCAAGAAATCAGTTGCATGGACCAATTCCTGATGTTCTGAAGAACATTTCTGTTTTAGAACACTTGAATGTTTCTTTTAACATGTTGGAAGGNGANGTACCAACAGGAGGTGTTTTTGGAAATGCAAGCNGGTTAGCCGTGACTNGAAACAATAAGCTTTGTGGAGGAATTTCAAAGNTGCATTTACCNCCATGCCCTNTCAAAGGTATGAAACCAACAAAACACCATAATTTCAGGTTGATAGCAGTGATNGTTAGTGTGGTTGCTTTTNTTCTCATATTGTCATCTATTCTAACTATCTACTGGATGAGGAAAAGAAACAAGAAGCCATCTTCNGATTCACCNACAATTGACCAGNTAGCTAAGGTTTCATACCAANACCTGCATCATGGAACTGATGGGTTCTCAGCTACAAACTTGATTGGATCAGGAAGCTTTGGNTCTGTGTTCAAAGGAAATCTTATGTCAGAAGATAAAGTTGTTGCCGTAAAGGTCNTGAACCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGCAGAATGTAATGCNCTNAAAAATATTAGACATCGAAATNTGATGGAGGGTTCGATGGTTGGTCCCGTCGGCGGCGGAGGAGTGGAATTTGATGGTGTTGCGGGCGGGGATGCAGTGGCAGAGGCGATGTCCATAGTAGGCAACCGGCGAACCTCAACGATTTTCAAGTCAAGGTCACTGCAGAGATAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00288	13846	17124	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000288s00019856.1	PF08263.7	LRRNT_2	18	56	7.50E-11
Glyur000288s00019856.1	PF13855.1	LRR_8	109	168	2.60E-06
Glyur000288s00019856.1	PF00560.28	LRR_1	452	472	0.0032
Glyur000288s00019856.1	PF13855.1	LRR_8	525	584	1.20E-09
Glyur000288s00019856.1	PF07714.12	Pkinase_Tyr	693	747	6.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.033
SRR1783600	control	0.031
SRR1783602	moderate drought stress	0.055
SRR1811619	moderate drought stress	0.035

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.046
DRR006522	Root Winter glycyrrhizin high producing strain	0.017
DRR006523	Root Summer glycyrrhizin low producing strain	0.038
DRR006524	Root Summer glycyrrhizin low producing strain	0.046
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.915
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.431

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.144
SRR2868004	Drought Stress(Tissue:root)	0.103
SRR2967015	Control (Tissue:root)	0.197

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.179
SRR9715740	Leave	0.000
SRR9715741	Leave	0.154
SRR9715739	Root	0.057
SRR9715742	Root	0.157
SRR9715743	Root	0.103

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.059
SRR8749028	MeJA induced 9h	0.029
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.026
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.006

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.142
SRR8400027	Control-Root	0.161