Gene detail information of Glyur000288s00019858.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G10030.24.00E-138TGACG motif-binding factor 4
NRXP_004502460.10PREDICTED: transcription factor TGA1-like isoform X1 [Cicer arietinum]
Swissprottr|Q39162|TGA4_ARATH0Transcription factor TGA4
trEMBLtr|G7J4F0|G7J4F0_MEDTR0BZIP family transcription factor {ECO:0000313|EMBL:AES72273.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002882751432444+


Gene family

Gene familysubfamily
Transcription Factors FamilybZIP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000288s00019858.3PF00170.16bZIP_1771093.20E-08
Glyur000288s00019858.3PF14144.1DOG11632408.50E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.942
SRR1783600control34.527
SRR1783602moderate drought stress50.053
SRR1811619moderate drought stress50.470

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain64.273
DRR006520Root Summer glycyrrhizin high producing strain63.031
DRR006521Root Winter glycyrrhizin high producing strain73.135
DRR006522Root Winter glycyrrhizin high producing strain72.671
DRR006523Root Summer glycyrrhizin low producing strain69.769
DRR006524Root Summer glycyrrhizin low producing strain69.728
DRR006525Leaf Summer glycyrrhizin high producing strain9.799
DRR006526Leaf Summer glycyrrhizin high producing strain9.948

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)95.725
SRR2868004Drought Stress(Tissue:root)134.467
SRR2967015Control (Tissue:root)148.882

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.156
SRR9715740Leave19.186
SRR9715741Leave17.270
SRR9715739Root51.502
SRR9715742Root42.488
SRR9715743Root45.719

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.018
SRR8749028MeJA induced 9h46.498
SRR8749029MeJA induced 9h23.088
SRR8749030Uninduced27.279
SRR8749031Uninduced9.611
SRR8749032Uninduced12.906

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root86.553
SRR8400027Control-Root70.335

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved