Gene detail information of Glyur000288s00019859.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G39660.10alanine:glyoxylate aminotransferase 2
NRXP_003538505.10PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Glycine max]
COGYP_001817512.16.00E-175class III aminotransferase [Opitutus terrae PB90-1]
Swissprottr|Q940M2|AGT21_ARATH0Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial (Precursor)
trEMBLtr|I1LMY4|I1LMY4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G36000.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002883291538462-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00827AGXT2 EC:2.6.1.44 2.6.1.40 Alanine, aspartate and glutamate metabolism map00250
Glycine, serine and threonine metabolismmap00260
Cysteine and methionine metabolismmap00270
Valine, leucine and isoleucine degradationmap00280


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0008483  transaminase activity

GO:0030170  pyridoxal phosphate binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000288s00019859.1PF00202.16Aminotran_3884199.70E-81


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control50.878
SRR1783600control50.873
SRR1783602moderate drought stress81.604
SRR1811619moderate drought stress81.549

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain110.402
DRR006520Root Summer glycyrrhizin high producing strain108.265
DRR006521Root Winter glycyrrhizin high producing strain15.129
DRR006522Root Winter glycyrrhizin high producing strain14.457
DRR006523Root Summer glycyrrhizin low producing strain76.945
DRR006524Root Summer glycyrrhizin low producing strain77.044
DRR006525Leaf Summer glycyrrhizin high producing strain7.204
DRR006526Leaf Summer glycyrrhizin high producing strain7.224

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)295.978
SRR2868004Drought Stress(Tissue:root)346.754
SRR2967015Control (Tissue:root)366.768

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.093
SRR9715740Leave1.377
SRR9715741Leave0.703
SRR9715739Root29.550
SRR9715742Root45.401
SRR9715743Root41.933

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.926
SRR8749028MeJA induced 9h21.242
SRR8749029MeJA induced 9h8.641
SRR8749030Uninduced12.273
SRR8749031Uninduced6.630
SRR8749032Uninduced10.281

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root155.045
SRR8400027Control-Root156.689

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved