Gene detail information of Glyur000288s00019861.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39640.2 | 4.00E-11 | gamma-glutamyl transpeptidase 1 |
| NR | XP_003552129.1 | 2.74E-17 | PREDICTED: gamma-glutamyltranspeptidase 1-like [Glycine max] |
| Swissprot | tr|Q8VYW6|GAGT1_ARATH | 1.00E-12 | Gamma-glutamyltranspeptidase 1 (Precursor) |
| trEMBL | tr|I1MYW5|I1MYW5_SOYBN | 1.00E-17 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G02450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00288 | 45373 | 49395 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K18592 | GGT1_5, CD224 | EC:2.3.2.2 3.4.19.13 3.4.19.14 | Arachidonic acid metabolism | map00590 |
| Taurine and hypotaurine metabolism | map00430 | |||
| Cyanoamino acid metabolism | map00460 | |||
| Glutathione metabolism | map00480 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000288s00019861.1 | PF01019.16 | G_glu_transpept | 1 | 40 | 1.80E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.375 |
| SRR1783600 | control | 2.663 |
| SRR1783602 | moderate drought stress | 4.705 |
| SRR1811619 | moderate drought stress | 4.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.796 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.371 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.177 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.730 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.601 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.926 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.286 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.532 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.416 |
| SRR2967015 | Control (Tissue:root) | 0.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.044 |
| SRR9715740 | Leave | 0.219 |
| SRR9715741 | Leave | 0.050 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.111 |
| SRR9715743 | Root | 0.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.160 |
| SRR8749029 | MeJA induced 9h | 0.040 |
| SRR8749030 | Uninduced | 0.195 |
| SRR8749031 | Uninduced | 0.189 |
| SRR8749032 | Uninduced | 0.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.038 |
| SRR8400027 | Control-Root | 0.032 |