Gene detail information of Glyur000288s00019883.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56230.1 | 7.00E-63 | BTB/POZ domain-containing protein |
| NR | XP_003538495.2 | 3.65E-149 | PREDICTED: BTB/POZ domain-containing protein At3g56230-like [Glycine max] |
| Swissprot | tr|Q9LYL9|Y3623_ARATH | 1.00E-83 | BTB/POZ domain-containing protein At3g56230 |
| trEMBL | tr|I1MYX4|I1MYX4_SOYBN | 9.00E-150 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G02550.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00288 | 177532 | 179193 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TRAF |
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000288s00019883.1 | PF00651.26 | BTB | 80 | 187 | 2.00E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.262 |
| SRR1783600 | control | 1.423 |
| SRR1783602 | moderate drought stress | 1.432 |
| SRR1811619 | moderate drought stress | 1.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.131 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.420 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.268 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.571 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.200 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 40.172 |
| SRR2868004 | Drought Stress(Tissue:root) | 36.245 |
| SRR2967015 | Control (Tissue:root) | 30.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.693 |
| SRR9715740 | Leave | 1.910 |
| SRR9715741 | Leave | 0.545 |
| SRR9715739 | Root | 0.473 |
| SRR9715742 | Root | 2.277 |
| SRR9715743 | Root | 1.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.068 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.097 |
| SRR8749031 | Uninduced | 0.151 |
| SRR8749032 | Uninduced | 0.158 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.066 |
| SRR8400027 | Control-Root | 15.522 |