Gene detail information of Glyur000289s00018727.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24540.1 | 6.00E-48 | beta glucosidase 31 |
| NR | KEH26882.1 | 1.65E-90 | glycoside hydrolase family 1 protein [Medicago truncatula] |
| COG | YP_004449345.1 | 5.00E-34 | beta-galactosidase [Haliscomenobacter hydrossis DSM 1100] |
| Swissprot | tr|Q7XKV2|BGL13_ORYSJ | 3.00E-69 | Beta-glucosidase 13 (Precursor) |
| trEMBL | tr|A0A072UBB7|A0A072UBB7_MEDTR | 6.00E-91 | Glycoside hydrolase family 1 protein {ECO:0000313|EMBL:KEH26882.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00289 | 144044 | 151468 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01188 | E3.2.1.21 | EC:3.2.1.21 | Starch and sucrose metabolism | map00500 |
| Cyanoamino acid metabolism | map00460 | |||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000289s00018727.1 | PF00232.13 | Glyco_hydro_1 | 67 | 252 | 3.90E-49 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.094 |
| SRR1783600 | control | 0.902 |
| SRR1783602 | moderate drought stress | 0.286 |
| SRR1811619 | moderate drought stress | 0.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 43.203 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.242 |
| SRR2967015 | Control (Tissue:root) | 19.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.119 |
| SRR9715742 | Root | 0.255 |
| SRR9715743 | Root | 0.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.056 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.007 |
| SRR8749032 | Uninduced | 0.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.541 |
| SRR8400027 | Control-Root | 26.423 |