Gene detail information of Glyur000290s00015784.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G30460.12.00E-169cleavage and polyadenylation specificity factor 30
NRXP_003546247.10PREDICTED: cleavage and polyadenylation specificity factor CPSF30-like [Glycine max]
Swissprottr|A9LNK9|CPSF_ARATH030-kDa cleavage and polyadenylation specificity factor 30 {ECO:0000303|PubMed:18479511}
trEMBLtr|I1MG20|I1MG20_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G13480.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002903387339906-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000290s00015784.1PF04146.10YTH2633985.80E-48


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.278
SRR1783600control12.361
SRR1783602moderate drought stress12.188
SRR1811619moderate drought stress12.053

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.482
DRR006520Root Summer glycyrrhizin high producing strain14.284
DRR006521Root Winter glycyrrhizin high producing strain17.290
DRR006522Root Winter glycyrrhizin high producing strain16.767
DRR006523Root Summer glycyrrhizin low producing strain14.382
DRR006524Root Summer glycyrrhizin low producing strain14.196
DRR006525Leaf Summer glycyrrhizin high producing strain10.439
DRR006526Leaf Summer glycyrrhizin high producing strain10.304

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.052
SRR2868004Drought Stress(Tissue:root)15.590
SRR2967015Control (Tissue:root)15.191

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.542
SRR9715740Leave12.356
SRR9715741Leave10.818
SRR9715739Root4.005
SRR9715742Root14.034
SRR9715743Root13.257

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.203
SRR8749028MeJA induced 9h19.030
SRR8749029MeJA induced 9h14.500
SRR8749030Uninduced11.782
SRR8749031Uninduced5.444
SRR8749032Uninduced4.978

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.836
SRR8400027Control-Root12.960

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved