Gene detail information of Glyur000290s00015797.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31320.1 | 6.00E-53 | LOB domain-containing protein 4 |
| NR | XP_003535054.1 | 1.21E-91 | PREDICTED: LOB domain-containing protein 4-like [Glycine max] |
| Swissprot | tr|Q9SHE9|LBD4_ARATH | 4.00E-67 | LOB domain-containing protein 4 |
| trEMBL | tr|I1L0C8|I1L0C8_SOYBN | 5.00E-92 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G02510.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00290 | 100874 | 104189 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000290s00015797.1 | PF03195.9 | DUF260 | 19 | 118 | 7.80E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.113 |
| SRR1783600 | control | 5.020 |
| SRR1783602 | moderate drought stress | 2.809 |
| SRR1811619 | moderate drought stress | 2.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.693 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.028 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.212 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.080 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.135 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.411 |
| SRR2967015 | Control (Tissue:root) | 3.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 2.051 |
| SRR9715742 | Root | 3.797 |
| SRR9715743 | Root | 3.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.495 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.081 |
| SRR8749030 | Uninduced | 0.096 |
| SRR8749031 | Uninduced | 0.225 |
| SRR8749032 | Uninduced | 0.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.355 |
| SRR8400027 | Control-Root | 15.521 |