Gene detail information of Glyur000290s00015803.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G59850.12.00E-129Pectin lyase-like superfamily protein
NRXP_003547316.10PREDICTED: polygalacturonase-like [Glycine max]
COGYP_001820212.12.00E-24galacturan 1,4-alpha-galacturonidase [Opitutus terrae PB90-1]
Swissprottr|P48979|PGLR_PRUPE4.00E-172Polygalacturonase (Precursor)
trEMBLtr|I1MG08|I1MG08_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G13360.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00290142593145368-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH28


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01184E3.2.1.15 EC:3.2.1.15 Pentose and glucuronate interconversions map00040


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004650  polygalacturonase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000290s00015803.1PF00295.12Glyco_hydro_28723961.30E-88


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.030
SRR1783600control0.016
SRR1783602moderate drought stress0.020
SRR1811619moderate drought stress0.031

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain4.185
DRR006526Leaf Summer glycyrrhizin high producing strain4.411

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.000
SRR2868004Drought Stress(Tissue:root)0.000
SRR2967015Control (Tissue:root)0.000

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.743
SRR9715740Leave8.803
SRR9715741Leave2.287
SRR9715739Root0.000
SRR9715742Root0.000
SRR9715743Root0.000

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.033
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.000
SRR8749031Uninduced0.023
SRR8749032Uninduced0.094

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.035
SRR8400027Control-Root0.000