Gene detail information of Glyur000290s00015809.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G45110.1 | 0 | NPR1-like protein 3 |
| NR | NP_001238658.1 | 0 | NPR1-1 protein [Glycine max] |
| Swissprot | tr|Q8L746|NPR3_ARATH | 0 | Regulatory protein NPR3 |
| trEMBL | tr|B8XQT5|B8XQT5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G02430.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00290 | 174519 | 179854 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TRAF |
| Ubiquitin Family | BTB |
| EAR motif-containing Proteins | TRAF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000290s00015809.1 | PF00651.26 | BTB | 60 | 180 | 4.00E-12 |
| Glyur000290s00015809.1 | PF11900.3 | DUF3420 | 225 | 273 | 4.80E-13 |
| Glyur000290s00015809.1 | PF13637.1 | Ank_4 | 299 | 342 | 6.10E-07 |
| Glyur000290s00015809.1 | PF12313.3 | NPR1_like_C | 372 | 574 | 3.50E-103 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 49.281 |
| SRR1783600 | control | 49.523 |
| SRR1783602 | moderate drought stress | 45.241 |
| SRR1811619 | moderate drought stress | 45.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 50.464 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 49.886 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 45.229 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 44.171 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 121.778 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 122.099 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 81.445 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 81.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 83.935 |
| SRR2868004 | Drought Stress(Tissue:root) | 149.316 |
| SRR2967015 | Control (Tissue:root) | 122.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 119.358 |
| SRR9715740 | Leave | 99.381 |
| SRR9715741 | Leave | 168.482 |
| SRR9715739 | Root | 49.104 |
| SRR9715742 | Root | 117.868 |
| SRR9715743 | Root | 100.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 124.562 |
| SRR8749028 | MeJA induced 9h | 136.858 |
| SRR8749029 | MeJA induced 9h | 158.365 |
| SRR8749030 | Uninduced | 272.130 |
| SRR8749031 | Uninduced | 261.115 |
| SRR8749032 | Uninduced | 200.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 70.796 |
| SRR8400027 | Control-Root | 84.563 |