Gene detail information of Glyur000291s00016216.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26660.1 | 2.00E-34 | LOB domain-containing protein 24 |
| NR | XP_010278070.1 | 3.31E-54 | PREDICTED: LOB domain-containing protein 24-like [Nelumbo nucifera] |
| Swissprot | tr|P59468|LBD24_ARATH | 3.00E-43 | LOB domain-containing protein 24 |
| trEMBL | tr|B9HV38|B9HV38_POPTR | 3.00E-52 | Uncharacterized protein {ECO:0000313|EMBL:EEF02615.2} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00291 | 91461 | 92238 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000291s00016216.1 | PF03195.9 | DUF260 | 10 | 108 | 4.00E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.075 |
| SRR1783600 | control | 0.076 |
| SRR1783602 | moderate drought stress | 0.078 |
| SRR1811619 | moderate drought stress | 0.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.225 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.225 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.094 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.008 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.291 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.116 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.190 |
| SRR8749028 | MeJA induced 9h | 0.152 |
| SRR8749029 | MeJA induced 9h | 0.363 |
| SRR8749030 | Uninduced | 0.131 |
| SRR8749031 | Uninduced | 1.218 |
| SRR8749032 | Uninduced | 1.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.000 |