Gene detail information of Glyur000291s00016217.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G21190.1 | 3.00E-140 | O-fucosyltransferase family protein |
| NR | KEH28615.1 | 0 | GDP-fucose protein O-fucosyltransferase [Medicago truncatula] |
| trEMBL | tr|A0A072URW6|A0A072URW6_MEDTR | 0 | GDP-fucose protein O-fucosyltransferase {ECO:0000313|EMBL:KEH28615.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00291 | 93864 | 97708 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000291s00016217.1 | PF10250.4 | O-FucT | 103 | 340 | 3.50E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 70.907 |
| SRR1783600 | control | 70.756 |
| SRR1783602 | moderate drought stress | 46.318 |
| SRR1811619 | moderate drought stress | 45.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 65.781 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 64.379 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.308 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.803 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.758 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.834 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 32.542 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 153.894 |
| SRR2868004 | Drought Stress(Tissue:root) | 93.421 |
| SRR2967015 | Control (Tissue:root) | 129.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 41.183 |
| SRR9715740 | Leave | 16.936 |
| SRR9715741 | Leave | 18.699 |
| SRR9715739 | Root | 10.741 |
| SRR9715742 | Root | 50.908 |
| SRR9715743 | Root | 46.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 56.666 |
| SRR8749028 | MeJA induced 9h | 54.417 |
| SRR8749029 | MeJA induced 9h | 35.399 |
| SRR8749030 | Uninduced | 40.053 |
| SRR8749031 | Uninduced | 22.771 |
| SRR8749032 | Uninduced | 27.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 104.838 |
| SRR8400027 | Control-Root | 119.265 |