Gene detail information of Glyur000291s00016232.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G17745.10D-3-phosphoglycerate dehydrogenase
NRXP_003531770.10PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max]
COGYP_005442157.12.00E-131D-3-phosphoglycerate dehydrogenase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprottr|O04130|SERA2_ARATH0D-3-phosphoglycerate dehydrogenase 2, chloroplastic (Precursor)
trEMBLtr|I1KVS6|I1KVS6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G23860.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00291168977173204-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00058serA, PHGDH EC:1.1.1.95 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260


Gene Ontology

biological_process

GO:0006564  L-serine biosynthetic process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004617  phosphoglycerate dehydrogenase activity

GO:0016597  amino acid binding

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000291s00016232.1PF00389.252-Hacid_dh984064.20E-33
Glyur000291s00016232.1PF02826.142-Hacid_dh_C2003752.00E-62
Glyur000291s00016232.1PF01842.20ACT5586175.60E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.626
SRR1783600control12.832
SRR1783602moderate drought stress18.018
SRR1811619moderate drought stress17.718

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain133.361
DRR006520Root Summer glycyrrhizin high producing strain132.056
DRR006521Root Winter glycyrrhizin high producing strain0.128
DRR006522Root Winter glycyrrhizin high producing strain0.123
DRR006523Root Summer glycyrrhizin low producing strain108.399
DRR006524Root Summer glycyrrhizin low producing strain107.484
DRR006525Leaf Summer glycyrrhizin high producing strain13.334
DRR006526Leaf Summer glycyrrhizin high producing strain13.203

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.250
SRR2868004Drought Stress(Tissue:root)16.605
SRR2967015Control (Tissue:root)29.753

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.760
SRR9715740Leave13.478
SRR9715741Leave4.691
SRR9715739Root5.044
SRR9715742Root19.506
SRR9715743Root16.461

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.743
SRR8749028MeJA induced 9h4.656
SRR8749029MeJA induced 9h0.965
SRR8749030Uninduced3.650
SRR8749031Uninduced1.426
SRR8749032Uninduced1.229

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.665
SRR8400027Control-Root19.571

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved