Gene detail information of Glyur000293s00015213.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08510.1 | 2.00E-79 | fatty acyl-ACP thioesterases B |
| NR | XP_003555265.2 | 0 | PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Glycine max] |
| COG | YP_006720699.1 | 1.00E-24 | acyl-CoA thioesterase [Geobacter metallireducens GS-15] |
| Swissprot | tr|Q9SQI3|FATB_GOSHI | 4.00E-95 | Palmitoyl-acyl carrier protein thioesterase, chloroplastic (Precursor) |
| trEMBL | tr|K7N323|K7N323_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G25833.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00293 | 819 | 2967 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10781 | FATB | EC:3.1.2.14 3.1.2.21 | Fatty acid metabolism | map01212 |
| Fatty acid biosynthesis | map00061 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000293s00015213.1 | PF01643.12 | Acyl-ACP_TE | 96 | 392 | 1.10E-87 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.375 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.298 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.090 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.089 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.377 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.004 |
| SRR2967015 | Control (Tissue:root) | 0.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.048 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.098 |
| SRR8749028 | MeJA induced 9h | 0.310 |
| SRR8749029 | MeJA induced 9h | 0.137 |
| SRR8749030 | Uninduced | 0.104 |
| SRR8749031 | Uninduced | 0.350 |
| SRR8749032 | Uninduced | 0.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.042 |
| SRR8400027 | Control-Root | 0.028 |