Gene detail

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Gene detail information of Glyur000293s00015222.3

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G08680.1	ATP synthase alpha/beta family protein
NR	XP_004497004.1	PREDICTED: uncharacterized protein LOC101500213 [Cicer arietinum]
COG	YP_004357703.1	ATP synthase subunit beta [Candidatus Pelagibacter sp. IMCC9063]
Swissprot	tr\|P17614\|ATPBM_NICPL	ATP synthase subunit beta, mitochondrial (Precursor)
trEMBL	tr\|I1NFS4\|I1NFS4_SOYBN	ATP synthase subunit beta {ECO:0000256\|RuleBase:RU003553}

Sequence

Transcript Sequence

>Glyur000293s00015222.3
CTCCTCAAACCACGCCCTCTTCACTCTCTCTCTCTCTGAAGATGGCTTCACGCAGACTCTTATCGTCTGTGATTCAATCTTCCCTCCGTCGATCTCCATCGAAACAACNATCCATTATTACTTCCTCAACAACATCGAGGCTCTCTTCCCATTCACGCGCTTCTCCTTACGGCTACCTCCTCAACCGTGTAACTGAGTATGCCACAGCGGCCGCGGCTGCTGCAGCTCCTCCTCCGTCGTCGCCGGCNAAGAAGGAGGTCGGTGGCGGTGGCAAGATCACCGACGAGTACACCGGGAAGGGTGCTATCGGGCACGTTTGCCAGGTCATCGGTGCCGTCGTGGATGTGAGATTCGAAGAGGGTTTGCCCCCAATCCTGACCGCGCTCGAGGTTCTGGATCATTCGACAAGGTTGGTGTTGGAGGTGGCGCAGCATATGGGTGAGGGCGTTGTTCGAACCATCGCTATGGATGAAACCAATGGGGTCGTTAGAGGTTGGCGCGTGCTCAACACTGGCTCCCCCATAGCGGTTCCTGTTGGTAGGTGTACCCTTGGTCGTATCATGAATGTTATAGGAGAGCCTATCGATGAGAAGGGCGATTTCAAAACCGAGCATCATTTGCCCATTCATAGAGAACCTCCTGCTTTTGTTGAGCAAGCAACAGAACAACAGATTCTTGTTACTGGGATCAAGGTTGTCGACATGCTTGCACCATACCAAAGAGGAGGAAAGATTGGGTTGTTTGGTGGTGCTGGAGTAGGAAAAACTGTGCTTATTATGGAACTTATTAACAATGTCGCAAAGGCNCATGGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAACGAACCAGAGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGTTGGGTGATAAGCAGAGTGAGAGCAANTGTGCTCTTGTGTATGGTCAAATGAACGAGCCCCCTGGTGCCCGTGCCCGTGTTGGTCTTACTGGGCTAACTGTGGCTGAACACTTCCGTGATGCTGAAGGACAAGATGTGCTTCTTTTCGTTGACAACATTTTCCGCTTTACCCAAGCTAACTCAGAGGTGTCTGCTTGCTTGGTCGTATTCCATCTGCTGTTGGTTACCAACCAACCTTGTCTACTGATCTTGGAGGAACGTATTACAACAACCAAGAAGGGTTCAATTACCTCTGTCCAAGCCATCTATGTGCCTGCTGATGACTTGACAGATCCTGCTCCTGCCACCACCTTTGCTCACTTGGATGCCACAACAGTGTTGTCACGACAGATCTCCGAGCTTGGTATCTATCCTGCTGTTGACCCCTTAGATTCCACATCTCGTATGCTTTCCCCACTTATTTTGGGTGAGGCCCACTACGAAACTGCTCGTGGTGTACAGAAAGTTCTTCAAAACTACAAGAATCTTCAAGATATCATTGCCATTTTGGGAATGGATGAGCTCAGTGAAGATGATAAATTGACTGTTGCACGTGCCCGTAAGATTCAACGATTCTTGAGCCAGCCTTTCCATGTGGCAGAAGTCTTCACTGGTGCCCCAGGCAAATATGTTGAGTTGAAGGAAAACATTGACAGTTTCCAGGGTGTGTTGGATGGAAAATACGATGACCTTNCAGAGCAGTCGTTTTACATGGTTGGCGGTATTGAAGAAGTCATTGCAAAGGCTGAGAAGATTGCTAAGGAATCAGCGACGTCTTAATCACACAACCCTGCTCTCATTTTATCCCTTTTTTTTGTTATAATTGCTAAATTTAATAATTTAGGAACTCTTTCTTGGCAATGCCAAACGACAAATTTTTCCATTTTAAAATTTGAAAATGTGTTCTGGTCATTCCGTTCATTTGAATGTTGTTGCCGACGGTGAGATGAACCAAGGTCTGTGGTCAACTGCCCCCTTTTTTCCGTTGTGCTTTTGAATAAGGGGAAGAGGCAAGAGGATATGTACATTTTTACTTTATTTTGATCAACGTTGGATGCATCAATGTTTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00293	48553	56809	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02133	ATPeF1B, ATP5B, ATP2	EC:3.6.3.14	Oxidative phosphorylation	map00190
			Alzheimer's disease	map05010
			Parkinson's disease	map05012
			Huntington's disease	map05016

Gene Ontology

biological_process

GO:0006754 ATP biosynthetic process

GO:0015986 ATP synthesis coupled proton transport

GO:0015991 ATP hydrolysis coupled proton transport

GO:0015992 proton transport

GO:0046034 ATP metabolic process

cellular_component GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain molecular_function GO:0005524 ATP binding GO:0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances GO:0016887 ATPase activity GO:0046933 proton-transporting ATP synthase activity, rotational mechanism "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000293s00015222.3	PF11421.3	Synthase_beta	1	49	3.60E-11
Glyur000293s00015222.3	PF02874.18	ATP-synt_ab_N	92	158	5.90E-19
Glyur000293s00015222.3	PF00006.20	ATP-synt_ab	214	433	4.90E-49
Glyur000293s00015222.3	PF00306.22	ATP-synt_ab_C	447	550	1.00E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	245.774
SRR1783600	control	245.913
SRR1783602	moderate drought stress	136.790
SRR1811619	moderate drought stress	134.726

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	146.248
DRR006520	Root Summer glycyrrhizin high producing strain	143.035
DRR006521	Root Winter glycyrrhizin high producing strain	65.733
DRR006522	Root Winter glycyrrhizin high producing strain	64.328
DRR006523	Root Summer glycyrrhizin low producing strain	102.836
DRR006524	Root Summer glycyrrhizin low producing strain	103.586
DRR006525	Leaf Summer glycyrrhizin high producing strain	121.852
DRR006526	Leaf Summer glycyrrhizin high producing strain	121.471

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	272.862
SRR2868004	Drought Stress(Tissue:root)	262.759
SRR2967015	Control (Tissue:root)	173.802

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	197.831
SRR9715740	Leave	133.800
SRR9715741	Leave	161.992
SRR9715739	Root	216.473
SRR9715742	Root	237.512
SRR9715743	Root	234.618

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	177.750
SRR8749028	MeJA induced 9h	168.226
SRR8749029	MeJA induced 9h	126.298
SRR8749030	Uninduced	53.135
SRR8749031	Uninduced	38.676
SRR8749032	Uninduced	38.385

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	177.041
SRR8400027	Control-Root	175.352