Gene detail information of Glyur000293s00015227.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04240.1 | 9.00E-05 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_006589651.1 | 0 | PREDICTED: tetratricopeptide repeat protein 5-like isoform X2 [Glycine max] |
| COG | YP_003197123.1 | 4.00E-07 | hypothetical protein Dret_0243 [Desulfohalobium retbaense DSM 5692] |
| trEMBL | tr|I1LEN6|I1LEN6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G41270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00293 | 78490 | 84611 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT41 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000293s00015227.2 | PF13414.1 | TPR_11 | 85 | 130 | 5.70E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.435 |
| SRR1783600 | control | 10.293 |
| SRR1783602 | moderate drought stress | 8.643 |
| SRR1811619 | moderate drought stress | 8.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.420 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.389 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.139 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.372 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.284 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.696 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.012 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.265 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.784 |
| SRR2967015 | Control (Tissue:root) | 12.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.483 |
| SRR9715740 | Leave | 6.809 |
| SRR9715741 | Leave | 8.851 |
| SRR9715739 | Root | 2.048 |
| SRR9715742 | Root | 5.944 |
| SRR9715743 | Root | 4.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.811 |
| SRR8749028 | MeJA induced 9h | 11.716 |
| SRR8749029 | MeJA induced 9h | 6.395 |
| SRR8749030 | Uninduced | 4.572 |
| SRR8749031 | Uninduced | 2.185 |
| SRR8749032 | Uninduced | 2.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.681 |
| SRR8400027 | Control-Root | 13.622 |