Gene detail information of Glyur000293s00015240.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G01290.15.00E-104ribose-5-phosphate isomerase 2
NRXP_003555942.17.42E-176PREDICTED: probable ribose-5-phosphate isomerase [Glycine max]
COGYP_002432131.12.00E-58ribose 5-phosphate isomerase [Desulfatibacillum alkenivorans AK-01]
Swissprottr|Q9ZU38|RPI2_ARATH2.00E-133Probable ribose-5-phosphate isomerase 2
trEMBLtr|V7BBP5|V7BBP5_PHAVU5.00E-172Uncharacterized protein {ECO:0000313|EMBL:ESW15010.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00293141596142402-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01807rpiA EC:5.3.1.6 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Pentose phosphate pathwaymap00030
Carbon fixation in photosynthetic organismsmap00710


Gene Ontology

biological_process

GO:0009052  pentose-phosphate shunt, non-oxidative branch


molecular_function

GO:0004751  ribose-5-phosphate isomerase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000293s00015240.1PF06026.9Rib_5-P_isom_A842622.80E-61


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.472
SRR1783600control23.915
SRR1783602moderate drought stress25.248
SRR1811619moderate drought stress25.135

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain83.979
DRR006520Root Summer glycyrrhizin high producing strain80.878
DRR006521Root Winter glycyrrhizin high producing strain1.914
DRR006522Root Winter glycyrrhizin high producing strain2.741
DRR006523Root Summer glycyrrhizin low producing strain84.935
DRR006524Root Summer glycyrrhizin low producing strain86.985
DRR006525Leaf Summer glycyrrhizin high producing strain195.793
DRR006526Leaf Summer glycyrrhizin high producing strain201.764

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)74.213
SRR2868004Drought Stress(Tissue:root)114.654
SRR2967015Control (Tissue:root)146.006

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave612.165
SRR9715740Leave865.050
SRR9715741Leave612.960
SRR9715739Root183.451
SRR9715742Root261.941
SRR9715743Root243.246

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.791
SRR8749028MeJA induced 9h29.342
SRR8749029MeJA induced 9h37.692
SRR8749030Uninduced116.117
SRR8749031Uninduced114.412
SRR8749032Uninduced107.738

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root37.061
SRR8400027Control-Root67.598

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved