Gene detail information of Glyur000294s00011853.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10920.1 | 0 | L-Aspartase-like family protein |
| NR | XP_003522764.1 | 0 | PREDICTED: argininosuccinate lyase, chloroplastic isoform X1 [Glycine max] |
| COG | YP_007466914.1 | 1.00E-165 | argininosuccinate lyase [Desulfocapsa sulfexigens DSM 10523] |
| Swissprot | tr|Q9LEU8|ARLY_ARATH | 0 | Argininosuccinate lyase, chloroplastic (Precursor) |
| trEMBL | tr|I1JV68|I1JV68_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G10100.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00294 | 39677 | 42991 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01755 | argH, ASL | EC:4.3.2.1 | Biosynthesis of amino acids | map01230 |
| Alanine, aspartate and glutamate metabolism | map00250 | |||
| Arginine biosynthesis | map00220 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000294s00011853.1 | PF00206.15 | Lyase_1 | 61 | 355 | 5.50E-71 |
| Glyur000294s00011853.1 | PF14698.1 | ASL_C2 | 418 | 487 | 4.90E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 113.282 |
| SRR1783600 | control | 113.209 |
| SRR1783602 | moderate drought stress | 106.208 |
| SRR1811619 | moderate drought stress | 106.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 119.900 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 118.527 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.119 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.090 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 65.754 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 66.611 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.556 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 61.994 |
| SRR2868004 | Drought Stress(Tissue:root) | 47.869 |
| SRR2967015 | Control (Tissue:root) | 47.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.352 |
| SRR9715740 | Leave | 19.615 |
| SRR9715741 | Leave | 13.548 |
| SRR9715739 | Root | 94.322 |
| SRR9715742 | Root | 92.421 |
| SRR9715743 | Root | 90.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.990 |
| SRR8749028 | MeJA induced 9h | 19.048 |
| SRR8749029 | MeJA induced 9h | 18.545 |
| SRR8749030 | Uninduced | 4.838 |
| SRR8749031 | Uninduced | 3.523 |
| SRR8749032 | Uninduced | 6.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 121.067 |
| SRR8400027 | Control-Root | 119.646 |