Gene detail

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Gene detail information of Glyur000294s00011864.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05810.1	7.00E-52	RING/U-box superfamily protein
NR	XP_004501635.1	7.28E-125	PREDICTED: RING-H2 finger protein ATL43-like [Cicer arietinum]
Swissprot	tr\|Q5EAE9\|ATL43_ARATH	2.00E-76	RING-H2 finger protein ATL43 (Precursor)
trEMBL	tr\|G7J546\|G7J546_MEDTR	8.00E-106	Anaphase-promoting complex subunit 11 RING-H2 finger protein {ECO:0000313\|EMBL:AES73171.2}

Sequence

Transcript Sequence

>Glyur000294s00011864.1
ATGGCACTCTCCTCACCCCTCANCACTACTCTCATTCTACTAATGATGATGAATATTGTTGCAGAGGCCAAGGATCCCCTAAGCCCCATTCCCCAAGATTCTCAACCCGGCCAACACTCCTCCTCAACGTTCAAACCAGGGGTGGGCATTGTGGTGGGAGTTATGACCCTCATGTTTTCCCTCACCTTCCTCTTCCTTCTCTACATCAAACACTGCAGCGGTGGCAACACCACCACCACCACCACCACAGCCAGTGGCGGAGGAATCTCAGCTTCACGAGCGGTGCTCCCGAGCGGAGGAGGAAGGAAGAACTCCGGCATTGACCGTTCCGTGGTGGAATCGTTACCCATATTCAGATTCGGATCGCTGAGGGGACAAAAGGAAGGGCTGGATTGTGCAGTTTGTCTCAGTAAGTTCGAGGCGACAGAGGTTCTCCGGTTGTTGCCGAAATGCAAGCACGCATTCCACGTGGAGTGTGTGGATACTTGGTTGGACGCGCATTCCACTTGCCCTCTCTGTCGGTGCAGGGTGGATCCGGAGGATATTCTTCTGGTGATTGAGAAGAACGAGAATAATCAACGGAACAACAAGGAAAAAGAGGGGGGAGGAGGAGAAGAGTGCTGTTTGGACCTCGAAAGAGGAGGAAGAAACGACGCTCAGCGGAGGCATTCGTCGGTTGGGGAAAGGGAATGGGAAAAGGAACGGAGGAAGACGACGTCGTCGTTTAGGAGGTCTTTGGATAGTTCTACTTCTTCCGCGTCGAGAATAAAGAAGAATTATGAGAGCGTGGGCGTTGGGATCGGTTGTTTTGTGCGTCCCAGGAAAGACGGGACGCTGTTGACGCGAGACGACACGGAGGAGGAGAAAGAGGAGATGGAGAACAGGGGAAGCGTGGAACGGAGGTTGGAGCACAGGATCATTGTCTCCCCGTCGCCGCGTGGGACCCACCTCCAACACCAGCGGCAGCGGTGGAGCGATGTNCAGCCCTGCGACCTCTTGTACCTGACGTCCGAGATGATAATCAGCAGCGAGTCACGCCGAGTCACGAGGATCGGCAACCACCGTGGCAGGGGAATAATGAAGAGTTCGAGAAGCGTGTCCGAAATCACGGGATTGAGCAGGTTCCCCAGCAGCAAGAGCAACAACAACATTAATAATAATAACAACAACAACAACAACAACAACGGCACAGGCGCGGGGAGAGGAGAGCAGGGGTTATTATTATCATTATCATCATCATATCAGTCTCATGAGCAGCAGCAACCAACAGCTGTACGGTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00294	104683	105963	-

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000294s00011864.1	PF13639.1	zf-RING_2	131	174	2.90E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.357
SRR1783600	control	2.625
SRR1783602	moderate drought stress	1.908
SRR1811619	moderate drought stress	1.805

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.720
DRR006520	Root Summer glycyrrhizin high producing strain	1.683
DRR006521	Root Winter glycyrrhizin high producing strain	0.012
DRR006522	Root Winter glycyrrhizin high producing strain	0.081
DRR006523	Root Summer glycyrrhizin low producing strain	0.086
DRR006524	Root Summer glycyrrhizin low producing strain	0.090
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.580
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.627

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	4.354
SRR2868004	Drought Stress(Tissue:root)	2.802
SRR2967015	Control (Tissue:root)	2.043

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.066
SRR9715740	Leave	0.125
SRR9715741	Leave	0.353
SRR9715739	Root	2.887
SRR9715742	Root	1.952
SRR9715743	Root	2.700

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.571
SRR8749028	MeJA induced 9h	1.451
SRR8749029	MeJA induced 9h	0.977
SRR8749030	Uninduced	0.564
SRR8749031	Uninduced	0.328
SRR8749032	Uninduced	0.739

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.952
SRR8400027	Control-Root	3.981