Gene detail information of Glyur000294s00011873.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G24560.12.00E-149ubiquitin-specific protease 16
NRXP_004501631.10PREDICTED: ubiquitin carboxyl-terminal hydrolase 16-like [Cicer arietinum]
Swissprottr|Q9SB51|UBP16_ARATH0Ubiquitin carboxyl-terminal hydrolase 16
trEMBLtr|K7KU50|K7KU50_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G09821.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00294138575145946-


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


molecular_function

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000294s00011873.1PF01753.13zf-MYND781151.10E-10
Glyur000294s00011873.1PF00443.24UCH5848873.20E-51


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.980
SRR1783600control23.228
SRR1783602moderate drought stress22.558
SRR1811619moderate drought stress22.394

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.015
DRR006520Root Summer glycyrrhizin high producing strain19.944
DRR006521Root Winter glycyrrhizin high producing strain13.311
DRR006522Root Winter glycyrrhizin high producing strain13.157
DRR006523Root Summer glycyrrhizin low producing strain21.736
DRR006524Root Summer glycyrrhizin low producing strain21.755
DRR006525Leaf Summer glycyrrhizin high producing strain12.730
DRR006526Leaf Summer glycyrrhizin high producing strain12.461

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.933
SRR2868004Drought Stress(Tissue:root)26.914
SRR2967015Control (Tissue:root)27.284

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.768
SRR9715740Leave25.212
SRR9715741Leave24.473
SRR9715739Root7.247
SRR9715742Root26.641
SRR9715743Root21.405

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.276
SRR8749028MeJA induced 9h21.816
SRR8749029MeJA induced 9h16.494
SRR8749030Uninduced17.458
SRR8749031Uninduced16.801
SRR8749032Uninduced21.377

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.602
SRR8400027Control-Root30.259

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved