Gene detail

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Gene detail information of Glyur000295s00015288.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11580.1	9.00E-99	methylesterase PCR A
NR	KHN30453.1	6.04E-154	Pectinesterase 2.2 [Glycine soja]
COG	YP_003404589.1	5.00E-41	pectinesterase [Haloterrigena turkmenica DSM 5511]
Swissprot	tr\|Q96576\|PME3_SOLLC	8.00E-126	Pectinesterase 3 (Precursor)
trEMBL	tr\|I1JAV9\|I1JAV9_SOYBN	3.00E-153	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur000295s00015288.1
CGATTACATGTCTGTTTACATGTCCGCAGTAGTTTTTCTATTCTGCTTTACGTGTTTTCTAGAGGTTTTTAGTGTTTTGGTTTTGTGGGATTGGGGGCTTGACGGCCCCCCTTTGCTCACCAAAATAAAAATAAAAATGGATTGAGAGCTTTCTTCACATGAACCAAATCCACCACANTCTGGTCTTAAAATAGAAAGTAGAAGACATTATTGCACGGCCACCTTNCCTTATTGCACTTGAATTTATCCATTGCACCCCACCTTGTACTCACGACCTCCCGTGATGATTCTCACCACTCCCACTTGAACCCACTTACTTACCACTCCTATTCAGCCTAGAAGGCACCCGTAATATTTATCAGGGATGTACCAACCACTTCCTTTTTAAAAGGATATAGACAGCACTTTAGGTGGTCCTGTGAAAAAAAGGATCCCCCAGTACATTGATTCTTGGATAATGGAAAGAAGGATCGGACGGTTCAAGATTAAAGGTGACAAACTTGGAAACTGTTGAAGCATGTGAGTTTAAAAATTTGCTATTCATGTCCTTTCAATATTTATATTATTTGCATGGAGCTCCAATTCATTGTCTCTGCATAGAGCCTCTGCTCTGTCAAAGATTGGCACTAACTGGCCAATTACTCATAGGGTATGATATATAATTATGAGGTTGCTTGCTTTTCATTGCTTTGTACTAGGTGTTTCTAGGAACGAAGATATATGGAACTTGGTGATGAGCATAAAAAAGTGACAAAGGTTTCAAATTCAATATGAAAAATTGTGATATCAGTCTAGATGTAAAATCAAAAATAAAAAACAGAGNTTGTAATACCCATTGATTGTATTGGTCCACCTGAAAGTCACCATGGAGATCTGAAAGCGAGCGAGTACACAAAAAGGTGGTTTGGAGTGTTGTCCACTTCCTGATTATATCTTATCCTTCTTTTAACGCGTGTCCTCAATGCTAGTACTAGTGCTGGTGCCCCTCTCAAATTCACGGTACAAAATGAGTGTCTCAAATTATCCACTGTTTTCATATNTAACAAATGAGTTTATAAGATTTCTTTAACCACAGTTTAATTTAAATCACCTAGTTTAAAATACTTAAAACTATTGGTTTATCGAGTACGAGAGATAAGGGATACCTGACACGNTTTCTATATACAGGCACCTATTTTTCTAATGNATGCTTTAGNCCATGTTATAAAATATATTATTTTACTGGGAGAAGAAATTATAAAGAAATCACACGCTTTCNTCGATTTGTACAATTGTACCTACAAAGTAGTGCGTTTGTTGGTCTATATAAGAACTAAGAAGGATACAAAAGATCAAGAAGAGCAACCAGAGTGAGCCTTAGCAGTATGGATTCTCAACAAATATCTCTGTTAGACAAGCCTAAAAAATCGACCCTTTCCAAAACTCTCTGGCTACTCCTCTCTGTAGCTGCTGTGGTAAGCTCAACAGCCCTCATTGCTTCTTATCTCATCGACCACTCCTCACCTCACCATTTCTGTGAACATGCACTTGATACCACATCCTGCTCAGCCCATGTCTCAGAAGTAGCTCAAGTTCCAATCTTGACCACCACCAGAAAAGACCACAAGTTCAAATTGCTCCAATCCTTCCTAATGAAGTCCACCTCACCCATTCAGAAANCCATGGAAACAGCCAACGCCATCAAACTCAAGGTTAACAACAATAATCCGAGGGAGGAAGCATCTTTGCGGGACTGTGAGCAGCTGATGGACTTGTCCATGGACAGAGTTTGGGACTCGGTGATGGCTCTAACAAAAGAGAGTACCAATATTGATTCACTGCAAGATGCACACACATGGCTAAGCAGCGTGCTCACTAACCATGCCACTTGCTTGGATGGATTAGATGGGCCCCCTCGGGCCCTGATGGAGGCCCAGCTTGAGGACTTGATATCCAGAGCAAGAACCTCTCTGGCCTTGCTTGTTGCTGTTTTGCCTCCAAATATCAATCCAAAGGCTGCCGTTGGGGATGGGTTTATAGCCCAGGACATGTGCTTCCAAAATACAGCAGGCCCACAGAAGCACCAGGCCGTGGCCCTCCGCGTCGGTGCCGACCAGNCCGTCATTAACCGCTGCCGCATTGACGCCTATCAAGATACTCTCTACGCTCACTCCAACAGGCAGTTCTACCGTGACTCCTTCATCACCGGCACCGTTGATTTCATCTTCGGTAACGCCGCCGTAGTATTCCAGAAGTGCAAGTTGGTGGCNCGAAAGCCCATGGATAAGCAGAAGAACATGGTCACGGCCCAAGGACGAACAGATCCAAACCAGAACACGGGGACCTCAATCCAGCAATGCGACGTAAAACCAAGCTCNGATCTTAAGCCCGTAGTGGGCTCCATCAAATCTTATTTGGGCCGTCCGTGGAAGCCATACTCCAGGACCGTTGTGATGCAGTCCTATGTGGACAGCCATATAGACCCAGCAGGGTGGGCCGAATGGGATGACCAACACAAGGACTATTTGAAGACATTGTATTATGGGGAGTACATGAACAAGGGACCAGGTGCTGGCACCAGCAAGAGAGTGAACTGGCCCGGTTACCATGTCATCAAAAGTGCAACAGAGGCAAGCAAGTTTACGGTGGCACAACTCATCCAAGGTGATGTTTGGTTGAAGAACACCGGGGTCAACTACATTGAGGGACTCTAGATTTGGGCTTTTGATGTTGCTTGTTTGTTTCTCTTTCTGACTTGGGTTTTGCCTTAAATAAAATAATAAAAAAACCCTTTGCTAGCTGTATGGCTTAATGAGGTTTGGAAAATTTCGTTAGTAGCCAAGTTTCAATAGCCTTGGGAAGACCTTTTTTTTTTTTTTTTAATAATAAGCCTCGGGAAGGCCTTGAATGCAAGTGCATCCTATCTGGAAAATAAACTTATCTACCTTGTCTTTTTTTTTTGTCATTAAAAGTTTAGATTAGG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00295	24869	29106	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01051	E3.1.1.11	EC:3.1.1.11	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component GO:0005618 cell wall molecular_function GO:0004857 enzyme inhibitor activity GO:0030599 pectinesterase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000295s00015288.1	PF04043.10	PMEI	45	198	3.80E-22
Glyur000295s00015288.1	PF01095.14	Pectinesterase	211	428	3.80E-108

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1061.742
SRR1783600	control	1069.494
SRR1783602	moderate drought stress	255.774
SRR1811619	moderate drought stress	256.166

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	41.871
DRR006520	Root Summer glycyrrhizin high producing strain	41.063
DRR006521	Root Winter glycyrrhizin high producing strain	1.116
DRR006522	Root Winter glycyrrhizin high producing strain	1.156
DRR006523	Root Summer glycyrrhizin low producing strain	70.913
DRR006524	Root Summer glycyrrhizin low producing strain	70.942
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.172
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.894

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	56.862
SRR2868004	Drought Stress(Tissue:root)	16.354
SRR2967015	Control (Tissue:root)	19.218

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	7.017
SRR9715740	Leave	0.624
SRR9715741	Leave	3.949
SRR9715739	Root	348.887
SRR9715742	Root	66.358
SRR9715743	Root	117.522

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.899
SRR8749028	MeJA induced 9h	22.728
SRR8749029	MeJA induced 9h	20.528
SRR8749030	Uninduced	15.843
SRR8749031	Uninduced	40.530
SRR8749032	Uninduced	41.913

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	234.025
SRR8400027	Control-Root	278.944