Gene detail information of Glyur000295s00015292.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G01350.17.00E-113Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
NRXP_007134882.10hypothetical protein PHAVU_010G084000g [Phaseolus vulgaris]
Swissprottr|Q8GX84|C3H1_ARATH1.00E-164Zinc finger CCCH domain-containing protein 1
trEMBLtr|V7ARN7|V7ARN7_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW06876.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002955362156119+


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000295s00015292.1PF00642.19zf-CCCH1932187.70E-10
Glyur000295s00015292.1PF13920.1zf-C3HC4_32673101.80E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.341
SRR1783600control24.561
SRR1783602moderate drought stress30.145
SRR1811619moderate drought stress30.964

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain37.948
DRR006520Root Summer glycyrrhizin high producing strain38.375
DRR006521Root Winter glycyrrhizin high producing strain37.562
DRR006522Root Winter glycyrrhizin high producing strain36.410
DRR006523Root Summer glycyrrhizin low producing strain37.112
DRR006524Root Summer glycyrrhizin low producing strain36.807
DRR006525Leaf Summer glycyrrhizin high producing strain25.257
DRR006526Leaf Summer glycyrrhizin high producing strain24.407

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)46.361
SRR2868004Drought Stress(Tissue:root)44.544
SRR2967015Control (Tissue:root)46.591

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave24.211
SRR9715740Leave25.362
SRR9715741Leave26.903
SRR9715739Root6.787
SRR9715742Root23.108
SRR9715743Root20.873

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h71.233
SRR8749028MeJA induced 9h66.465
SRR8749029MeJA induced 9h48.361
SRR8749030Uninduced28.096
SRR8749031Uninduced27.550
SRR8749032Uninduced19.090

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.482
SRR8400027Control-Root43.321

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved