Gene detail information of Glyur000295s00015311.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G49980.10DNA/RNA polymerases superfamily protein
NRXP_004511315.10PREDICTED: DNA polymerase kappa-like [Cicer arietinum]
COGYP_006417596.13.00E-66nucleotidyltransferase/DNA polymerase involved in DNA repair [Aequorivita sublithincola DSM 14238]
Swissprottr|Q8RXL1|REV1_ARATH3.00E-27DNA repair protein REV1
trEMBLtr|I1LFP9|I1LFP9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G00410.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00295185906196078+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03511POLK EC:2.7.7.7 Fanconi anemia pathway map03460


Gene Ontology

biological_process

GO:0006281  DNA repair


molecular_function

GO:0003684  damaged DNA binding

GO:0003887  DNA-directed DNA polymerase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000295s00015311.1PF00817.15IMS1342782.80E-42
Glyur000295s00015311.1PF11799.3IMS_C3654859.20E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.527
SRR1783600control15.616
SRR1783602moderate drought stress17.828
SRR1811619moderate drought stress17.742

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.758
DRR006520Root Summer glycyrrhizin high producing strain20.575
DRR006521Root Winter glycyrrhizin high producing strain25.417
DRR006522Root Winter glycyrrhizin high producing strain24.740
DRR006523Root Summer glycyrrhizin low producing strain19.631
DRR006524Root Summer glycyrrhizin low producing strain19.564
DRR006525Leaf Summer glycyrrhizin high producing strain12.066
DRR006526Leaf Summer glycyrrhizin high producing strain11.971

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.929
SRR2868004Drought Stress(Tissue:root)22.476
SRR2967015Control (Tissue:root)23.902

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.868
SRR9715740Leave11.739
SRR9715741Leave14.355
SRR9715739Root2.292
SRR9715742Root6.967
SRR9715743Root7.175

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.420
SRR8749028MeJA induced 9h19.716
SRR8749029MeJA induced 9h17.064
SRR8749030Uninduced23.944
SRR8749031Uninduced20.598
SRR8749032Uninduced17.108

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.581
SRR8400027Control-Root20.547

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved