Gene detail information of Glyur000296s00018754.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55110.1 | 3.00E-90 | indeterminate(ID)-domain 7 |
| NR | KEH39925.1 | 6.01E-160 | C2H2-type zinc finger protein [Medicago truncatula] |
| Swissprot | tr|Q8H1F5|IDD7_ARATH | 5.00E-113 | Protein indeterminate-domain 7 {ECO:0000303|PubMed:16784536} |
| trEMBL | tr|A0A072VP83|A0A072VP83_MEDTR | 2.00E-160 | C2H2-type zinc finger protein {ECO:0000313|EMBL:KEH39925.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00296 | 89424 | 93098 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000296s00018754.1 | PF00096.21 | zf-C2H2 | 80 | 102 | 0.0097 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.904 |
| SRR1783600 | control | 16.803 |
| SRR1783602 | moderate drought stress | 23.346 |
| SRR1811619 | moderate drought stress | 23.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.050 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.595 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.950 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.340 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.188 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.744 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.366 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.729 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.287 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.774 |
| SRR2967015 | Control (Tissue:root) | 6.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.437 |
| SRR9715740 | Leave | 16.772 |
| SRR9715741 | Leave | 14.834 |
| SRR9715739 | Root | 8.785 |
| SRR9715742 | Root | 7.988 |
| SRR9715743 | Root | 7.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.016 |
| SRR8749028 | MeJA induced 9h | 0.016 |
| SRR8749029 | MeJA induced 9h | 0.252 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.622 |
| SRR8400027 | Control-Root | 14.533 |