Gene detail information of Glyur000296s00018768.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G33010.10glycine decarboxylase P-protein 1
NRXP_004498895.10PREDICTED: glycine dehydrogenase [decarboxylating], mitochondrial-like isoform X1 [Cicer arietinum]
COGYP_007142361.10glycine dehydrogenase [Crinalium epipsammum PCC 9333]
Swissprottr|P26969|GCSP_PEA0Glycine dehydrogenase (decarboxylating), mitochondrial (Precursor)
trEMBLtr|I1M923|I1M923_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G10820.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00296171186178905+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00281GLDC, gcvP EC:1.4.4.2 Carbon metabolism map01200
Glyoxylate and dicarboxylate metabolismmap00630
Glycine, serine and threonine metabolismmap00260


Gene Ontology

biological_process

GO:0006544  glycine metabolic process

GO:0006546  glycine catabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0004375  glycine dehydrogenase (decarboxylating) activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000296s00018768.1PF02347.11GDC-P945212.20E-200
Glyur000296s00018768.1PF02347.11GDC-P5398142.00E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control29.407
SRR1783600control29.389
SRR1783602moderate drought stress21.070
SRR1811619moderate drought stress20.916

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.957
DRR006520Root Summer glycyrrhizin high producing strain19.769
DRR006521Root Winter glycyrrhizin high producing strain34.927
DRR006522Root Winter glycyrrhizin high producing strain33.826
DRR006523Root Summer glycyrrhizin low producing strain19.807
DRR006524Root Summer glycyrrhizin low producing strain19.377
DRR006525Leaf Summer glycyrrhizin high producing strain1267.181
DRR006526Leaf Summer glycyrrhizin high producing strain1260.230

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)63.147
SRR2868004Drought Stress(Tissue:root)49.323
SRR2967015Control (Tissue:root)48.583

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave470.685
SRR9715740Leave865.106
SRR9715741Leave395.620
SRR9715739Root10.773
SRR9715742Root33.155
SRR9715743Root27.160

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h75.829
SRR8749028MeJA induced 9h76.034
SRR8749029MeJA induced 9h64.181
SRR8749030Uninduced66.023
SRR8749031Uninduced94.868
SRR8749032Uninduced108.256

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root59.754
SRR8400027Control-Root51.300

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved