Gene detail information of Glyur000297s00023393.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G01818.1 | 1.00E-30 | PLATZ transcription factor family protein |
| NR | XP_003529229.1 | 3.04E-99 | PREDICTED: uncharacterized protein LOC100820425 isoform X1 [Glycine max] |
| trEMBL | tr|I1KKX6|I1KKX6_SOYBN | 1.00E-99 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G27310.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00297 | 102496 | 104274 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PLATZ |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000297s00023393.1 | PF04640.9 | PLATZ | 67 | 160 | 3.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.421 |
| SRR1783600 | control | 3.468 |
| SRR1783602 | moderate drought stress | 1.901 |
| SRR1811619 | moderate drought stress | 1.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.087 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.046 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.806 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.699 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.817 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.820 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.615 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.859 |
| SRR2967015 | Control (Tissue:root) | 0.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.123 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.371 |
| SRR9715742 | Root | 0.453 |
| SRR9715743 | Root | 0.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.130 |
| SRR8749028 | MeJA induced 9h | 0.397 |
| SRR8749029 | MeJA induced 9h | 0.559 |
| SRR8749030 | Uninduced | 0.467 |
| SRR8749031 | Uninduced | 0.492 |
| SRR8749032 | Uninduced | 0.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.900 |
| SRR8400027 | Control-Root | 12.925 |