Gene detail

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Gene detail information of Glyur000297s00023395.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01820.1	3.00E-157	Leucine-rich repeat protein kinase family protein
NR	XP_003529231.1	0	PREDICTED: probable receptor protein kinase TMK1-like [Glycine max]
COG	YP_004775215.1	2.00E-13	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|P43298\|TMK1_ARATH	0	Probable receptor protein kinase TMK1 (Precursor)
trEMBL	tr\|K7L2C1\|K7L2C1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G27390.2}

Sequence

Transcript Sequence

>Glyur000297s00023395.1
ATGAAGAAACCCCAATTGGGTTTCGTTCTCCGCGTTCTCCTATTGTTTTCGGTTACGTTTCCGTTTGCATGGTCACAGTCACAAGACGCGGTTGTGATGCAAACGCTGAAGAAAGCGATCATCAACAATGGAAGTGGAAGCGGAACCAGTGGTCTTCAGTGGTCAGACCCAGACGTGTGCAAGTGGAACCATATTCAGTGCGATTCAACGAAAAGGGTCACCGCAATTCAAATCGGTAACCAGAACCTTCAGGGTACTCTGCCCAAAGAACTGAGTCAGCTCACTGAGTTGACTCGCTTCGAGTGCATGACCAATGGTCTCTCGGGTCCTTTCCCTTACATGCCAAAGTCATTGCAGTTTTTGATCATTCACAACAACAACTTCACCTCATTCCCCAGTGATTTCTTCAGCAACATGAGTAATCTTCAAGAGGTGAGAATTGACTATAACCCTTTTCCTAAGTGGCGGGTACCTGATAGCTTAAAAGACTGTGTTGCCCTTCAGACTTTCTCTGCAATGAGTGCTGGTTTTTTTGGTGGAATACCAGAGTTTTTTGGAAAAGATGGTCCCTTTCCGGGTTTGGTTTACTTGGGTCTGTGTTTTAATTCCTTTGAAGGTGGGTTGCCTAATGGCTTCTCTGGGACTTCTATAGAGAATCTTTTGGTGAATGGTCAGAATAGTAATTCTAAGCTCAATGGTACCCTTGCTGTGTTACAGAACATGACTTCATTGAAACAGATTTGGGTTCATGGGAATTCATTTACTGGTCCTATACCTGACTTGTCAAACCATGATCAGCTTTTTGATGTGAGTTTGAGGGATAATCAGTTGACTGGTGTTGTTCCACCTTCTCTCACTGCTCTTCCTGCACTCCAAGTTGTAAACTTGACCAACAATTATCTACAAGGTTCACCTCCAAAGTTCAAGGATGGGGTGAGGGTTGATAATGACATGGTGAAAGGGAACAATAGGTTCTGTAGAAAGGAGGTTGGTCAGCCATGTAGTTCACTTGTGATTGCTTTGCTTTCTGTTGTTGAGCCTTTTGGTTATCCTCTAAAACTTGCTGATAGTTGGCAGGGCAATGACCCTTGTGCTAATGATCAACATTGGGATGGGATTGTTTGTTCTGGTGGTAACATTTCCATTATCAGCTTTCAGAACATGGGTCTCTCTGGAAGTATATCTCCTAGTTTTGCTAGCCTTACATCTGTGACGAGGTTGCTTCTTGCTAACAATGGTCTCACCGGTACAATACCGAGGGAACTTACTAGTATGCCTCTTCTGAAGGAGCTGGATGTTTCGAATAATAGGTTGTATGGCCAGGTGCCACCGTTCCGCGGAGATGTGGTTGTTAAAACCGGTGGGAATCCTGATATTGGGAAGGATAAACCTCAATCCCCGCCAGGATCGGATTCTGGAGGGAAAGATAAGAAGAAACATAGTACTGGTGCCATTGTTGGCATTGTGGTGGGGTGTGTTGGCTTACTTGGTGTAGGGGTTTTGGTATTTGTGGTGTATGGTAGAAAACATAAGCGTGCTGGCAAGGCTCCAAGTCCAAATGTAGTAGTGGTACATCCCCGTCATTCTGGGGATGGAAATGGTGTGAAGATAAGTGTTGCAGCTGCAAGTGCCAGTGCCAGTGCTGTTGGTGGAGCTGGAGGAACTGGTGGTGGATTTAGTCCATCGAGTAGTGTTCAGAATGTGGAAGCTGGTAATATGGTGATTTCGATTCAGGTTTTGAGAGAAGTTACAAACAATTTTAGTGAAGGAAACATATTGGGGAAGGGCGGTTTTGGCACTGTATATAAAGGAGAATTGCATGATGGAACGAAGATTGCGGTTAAAAGGATGGAATGTGAAATGGGGGGTGAGAAGGGGCTGAGTGAGTTCAGGTCTGAAATTGCAGTACTCACTAAGGTTCGTCATAGGCATTTGGTCGCACTTCTGGGCCATTGCTTGGATGGAAATGAGAGGCTTCTTGTGTATGAATACATGCCTCAGGGGCCTCTTATCACTGGAAGAGTCACAACAAAGGTTGATGTATACAGCTACGGTGTGATTCTCATGGAGATGATAACAGGAAGGAAAGCAATTGACAACAGNCAACCAGAAGAGAATGTGCACCTCGTTACATGGTTCCGCAGGATGCTGCTGAACAAGGACTCATTCCGAAAGCACATCGATCCAACAATGGACGTCGACGAGGAAGCCTTGGAGAGTCTCAGGACCGTTGCGGATTTGGCCGGCCACTGCTGCGCAAGGGAGCCCCATCAGCGCCCCGACATGAGCCATGTGGTCAATGTGCTAGCACCTCTTGTTGAGATTTGGAAGCCTTCAGAGCCTGATGCTGATGACATATATGGGATTGACTTGGACATATCCTTGCCTCAAGCACTCAGCAAGTGGCAGGCTGTTGAAGGAACGAGCACCCTTGATCTAACTTCTTCATCAATNCTTACTAGTGCAGAAAATACACAGTCAAGCATACCGCCCCGGTCGCCTGGATTTGCGGATTCCTTTACATCTTCCGATGCACGATGAAGTTGTTTGATACACATTTACATCAGTTCTTCTCTCTATTTTTTTTCCAACTTCTGCCTACCCTTTGGACTATAGGTTTGTTTCAGGATGTAGTTGGACATANATTGCACCCTCCATTCCCCAAACTTGCCTACCTTTTGCTTTAGGTTTTTCAATTTGCTGCAAGAAGACAAATGCAGAAC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00297	126902	130836	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.6.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000297s00023395.1	PF00560.28	LRR_1	117	139	0.11
Glyur000297s00023395.1	PF13504.1	LRR_7	428	438	8.1
Glyur000297s00023395.1	PF07714.12	Pkinase_Tyr	590	670	8.80E-15
Glyur000297s00023395.1	PF00069.20	Pkinase	675	767	3.60E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.247
SRR1783600	control	2.330
SRR1783602	moderate drought stress	2.212
SRR1811619	moderate drought stress	2.184

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.045
DRR006520	Root Summer glycyrrhizin high producing strain	7.357
DRR006521	Root Winter glycyrrhizin high producing strain	1.059
DRR006522	Root Winter glycyrrhizin high producing strain	1.082
DRR006523	Root Summer glycyrrhizin low producing strain	15.739
DRR006524	Root Summer glycyrrhizin low producing strain	15.961
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.523
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.441

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.623
SRR2868004	Drought Stress(Tissue:root)	3.617
SRR2967015	Control (Tissue:root)	4.635

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	4.914
SRR9715740	Leave	5.408
SRR9715741	Leave	5.852
SRR9715739	Root	14.356
SRR9715742	Root	25.198
SRR9715743	Root	21.152

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.381
SRR8749028	MeJA induced 9h	10.065
SRR8749029	MeJA induced 9h	5.095
SRR8749030	Uninduced	4.929
SRR8749031	Uninduced	0.652
SRR8749032	Uninduced	1.082

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.900
SRR8400027	Control-Root	4.060