Gene detail information of Glyur000297s00023397.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G24130.1 | 5.00E-104 | Pectin lyase-like superfamily protein |
| NR | KHN15468.1 | 0 | Putative pectinesterase 29 [Glycine soja] |
| COG | YP_004641919.1 | 3.00E-51 | pectinesterase [Paenibacillus mucilaginosus KNP414] |
| Swissprot | tr|Q4PSN0|PME29_ARATH | 1.00E-125 | Probable pectinesterase 29 (Precursor) |
| trEMBL | tr|B9RNC0|B9RNC0_RICCO | 3.00E-178 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00297 | 135848 | 144553 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000297s00023397.1 | PF01095.14 | Pectinesterase | 43 | 298 | 3.90E-53 |
| Glyur000297s00023397.1 | PF01095.14 | Pectinesterase | 351 | 635 | 1.90E-64 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.005 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.055 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.016 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.836 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.781 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.048 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.330 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.379 |
| SRR2967015 | Control (Tissue:root) | 0.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.028 |
| SRR9715743 | Root | 0.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.947 |
| SRR8749028 | MeJA induced 9h | 16.850 |
| SRR8749029 | MeJA induced 9h | 10.661 |
| SRR8749030 | Uninduced | 11.785 |
| SRR8749031 | Uninduced | 11.028 |
| SRR8749032 | Uninduced | 7.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.152 |
| SRR8400027 | Control-Root | 0.071 |