Gene detail information of Glyur000297s00023404.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G06820.10carotenoid isomerase
NRXP_003519091.10PREDICTED: prolycopene isomerase, chloroplastic-like isoform X1 [Glycine max]
COGYP_007132658.10carotene isomerase [Stanieria cyanosphaera PCC 7437]
Swissprottr|Q8S4R4|CRTSO_SOLLC0Prolycopene isomerase, chloroplastic (Precursor)
trEMBLtr|I1JGC5|I1JGC5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G34060.1} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00297182359188191+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K09835crtISO, crtH EC:5.2.1.13 Carotenoid biosynthesis map00906


Gene Ontology

biological_process

GO:0016117  carotenoid biosynthetic process


molecular_function

GO:0016853  isomerase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000297s00023404.1PF13450.1NAD_binding_81071684.40E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.091
SRR1783600control6.129
SRR1783602moderate drought stress5.018
SRR1811619moderate drought stress5.057

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.686
DRR006520Root Summer glycyrrhizin high producing strain8.518
DRR006521Root Winter glycyrrhizin high producing strain8.330
DRR006522Root Winter glycyrrhizin high producing strain8.207
DRR006523Root Summer glycyrrhizin low producing strain7.311
DRR006524Root Summer glycyrrhizin low producing strain7.154
DRR006525Leaf Summer glycyrrhizin high producing strain13.878
DRR006526Leaf Summer glycyrrhizin high producing strain13.752

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)37.467
SRR2868004Drought Stress(Tissue:root)34.351
SRR2967015Control (Tissue:root)25.612

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.019
SRR9715740Leave17.461
SRR9715741Leave18.648
SRR9715739Root2.899
SRR9715742Root6.668
SRR9715743Root4.785

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.019
SRR8749028MeJA induced 9h6.562
SRR8749029MeJA induced 9h5.149
SRR8749030Uninduced4.301
SRR8749031Uninduced1.624
SRR8749032Uninduced3.247

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.443
SRR8400027Control-Root17.460

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved