Gene detail information of Glyur000299s00021234.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G19520.1 | 0 | Transducin family protein / WD-40 repeat family protein |
| NR | XP_003533752.1 | 0 | PREDICTED: WD-40 repeat-containing protein MSI4-like isoform 1 [Glycine max] |
| COG | YP_001518591.1 | 5.00E-13 | WD-40 repeat-containing protein [Acaryochloris marina MBIC11017] |
| Swissprot | tr|O22607|MSI4_ARATH | 0 | WD-40 repeat-containing protein MSI4 |
| trEMBL | tr|I1L1H2|I1L1H2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G07120.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00299 | 41676 | 54385 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000299s00021234.1 | PF12265.3 | CAF1C_H4-bd | 58 | 92 | 3.60E-09 |
| Glyur000299s00021234.1 | PF00400.27 | WD40 | 200 | 222 | 0.0051 |
| Glyur000299s00021234.1 | PF00400.27 | WD40 | 264 | 299 | 7.10E-05 |
| Glyur000299s00021234.1 | PF00400.27 | WD40 | 308 | 344 | 9.00E-07 |
| Glyur000299s00021234.1 | PF00400.27 | WD40 | 354 | 393 | 1.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 46.340 |
| SRR1783600 | control | 47.288 |
| SRR1783602 | moderate drought stress | 56.690 |
| SRR1811619 | moderate drought stress | 56.723 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 58.417 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 57.485 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 63.717 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 62.471 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 61.769 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 61.517 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 40.605 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 40.299 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 59.441 |
| SRR2868004 | Drought Stress(Tissue:root) | 53.262 |
| SRR2967015 | Control (Tissue:root) | 54.620 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 50.522 |
| SRR9715740 | Leave | 47.335 |
| SRR9715741 | Leave | 48.876 |
| SRR9715739 | Root | 18.512 |
| SRR9715742 | Root | 45.567 |
| SRR9715743 | Root | 42.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 100.326 |
| SRR8749028 | MeJA induced 9h | 64.536 |
| SRR8749029 | MeJA induced 9h | 66.465 |
| SRR8749030 | Uninduced | 21.343 |
| SRR8749031 | Uninduced | 20.228 |
| SRR8749032 | Uninduced | 28.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 62.370 |
| SRR8400027 | Control-Root | 62.537 |