Gene detail information of Glyur000299s00021239.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G13750.1 | 0 | beta galactosidase 1 |
| NR | XP_007138730.1 | 0 | hypothetical protein PHAVU_009G232500g [Phaseolus vulgaris] |
| COG | YP_008089223.1 | 6.00E-42 | Beta-galactosidase [Chthonomonas calidirosea T49] |
| Swissprot | tr|P48981|BGAL_MALDO | 0 | Beta-galactosidase (Precursor) |
| trEMBL | tr|V7AYU3|V7AYU3_PHAVU | 0 | Beta-galactosidase {ECO:0000256|RuleBase:RU000675} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00299 | 87521 | 106433 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH35 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000299s00021239.1 | PF01301.14 | Glyco_hydro_35 | 34 | 294 | 1.10E-91 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.557 |
| SRR1783600 | control | 19.606 |
| SRR1783602 | moderate drought stress | 19.574 |
| SRR1811619 | moderate drought stress | 19.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.518 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.743 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.107 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.788 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.670 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.302 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.531 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 75.085 |
| SRR2868004 | Drought Stress(Tissue:root) | 103.163 |
| SRR2967015 | Control (Tissue:root) | 105.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 32.359 |
| SRR9715740 | Leave | 39.267 |
| SRR9715741 | Leave | 41.264 |
| SRR9715739 | Root | 4.152 |
| SRR9715742 | Root | 43.775 |
| SRR9715743 | Root | 38.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.728 |
| SRR8749028 | MeJA induced 9h | 195.713 |
| SRR8749029 | MeJA induced 9h | 29.294 |
| SRR8749030 | Uninduced | 91.985 |
| SRR8749031 | Uninduced | 67.724 |
| SRR8749032 | Uninduced | 52.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 106.434 |
| SRR8400027 | Control-Root | 154.378 |