Gene detail

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Gene detail information of Glyur000299s00021242.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G56860.1	3.00E-16	GATA type zinc finger transcription factor family protein
NR	XP_003546455.1	1.57E-89	PREDICTED: putative GATA transcription factor 22-like [Glycine max]
Swissprot	tr\|Q5HZ36\|GAT21_ARATH	8.00E-33	GATA transcription factor 21
trEMBL	tr\|I1MH70\|I1MH70_SOYBN	6.00E-90	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G18380.1}

Sequence

Transcript Sequence

>Glyur000299s00021242.1
ATGAATAATATAGTACCAACTTATCGTTATTCATCAGTATCTTCTTCTTCTTCTCCTATGCCTTTAGATCTTAATGAAGATCACAAGCACCACCACCACCTCTTTAACGTCACAAACCATCAAGCCTCCGCTTCTTCGTCTTCTTATTCCATACTCTTCAACCCGGATNAAGATCAAGGAAGATCTTCATCTTACTATTGGGAACCAAAGCACATATATGAAGAGGNTGAGAAGCTTAATATTCCTTCTAGAGGATCATCATGGGATTATCAAGCAGTGGAAAGGAATGAAAACAGCAGAAGCAGTAGTCATGAGCTGAAGCTGAAAGGTTGCTTGAAGAAAGAGGATGAGATTAATGAAAATCTTCAAGGTGGTGGTGGTGATGAGGATAGTTCAGTGAAGTGGATGCCTTTAAAGATGAGAATTATAAGGAGAATGATGGTAGATCAAACGGGCACCTCTGAGCACAAGCTTGAAAGTAGTCAAAAGCTACCTCTAGGAACTGATAATAATAGCAGCAACAACAATTCTTCAAATTTCAACAGCAATAATATCACTGTTAGGGTTTGTTCTGATTGCNACACCACTAAGACCCCTCTCTGGAGGAGTGGACCAAGAGGTCCTAAGTCACTTTGCAACGCCTGTGGGATTCGACAAAGGAAAGCAAGACGTGCCCTTGCTGCAGCTGCATCAGCAAGTGGAACGAATATTAATCTTGTGGCAGCTGAGAAGAAACCTCATAACAAGTTGCAAGGCAGAGGGAAGAAGAAGAAGAGATCCAAAACTGAGTGTGAAGAAGCATCACCACAGTTGAAGAAGAAGAAGCATAAACTTGGAGTTGGAGGCAAGAGTACTTGTCGAGGTAGAGAAAGCAAGTTTANTAGTTTTGAGGATTTGACAATGAGATTGAGCAAGAACTTGAGTCATCTCCAACAAGTTTTCCCTCAGGATGAGAAAGAGGCTGCAATCCTACTCATGGCTTTGTCTTATGGCTTGGCTTTCCCTCACATCGTTACTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00299	151779	153551	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding GO:0008270 zinc ion binding GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000299s00021242.1	PF00320.22	GATA	190	223	3.90E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.021
SRR1783600	control	0.072
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.101
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.049
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.241

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.018
SRR2868004	Drought Stress(Tissue:root)	0.097
SRR2967015	Control (Tissue:root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.815
SRR9715740	Leave	0.092
SRR9715741	Leave	1.324
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.016
SRR8400027	Control-Root	0.036