Gene detail information of Glyur000299s00021245.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25810.17.00E-114xyloglucan endotransglycosylase 6
NRKHN22640.12.17E-170Putative xyloglucan endotransglucosylase/hydrolase protein 23 [Glycine soja]
COGYP_004641534.11.00E-13beta-glucanase [Paenibacillus mucilaginosus KNP414]
Swissprottr|Q38910|XTH23_ARATH8.00E-148Probable xyloglucan endotransglucosylase/hydrolase protein 23 (Precursor)
trEMBLtr|V7CCR5|V7CCR5_PHAVU1.00E-170Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00299166914169410-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006073  cellular glucan metabolic process


cellular_component

GO:0005618  cell wall

GO:0048046  apoplast


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762  xyloglucan:xyloglucosyl transferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000299s00021245.1PF00722.16Glyco_hydro_16292072.90E-60
Glyur000299s00021245.1PF06955.7XET_C2382844.70E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.610
SRR1783600control19.736
SRR1783602moderate drought stress291.684
SRR1811619moderate drought stress290.510

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.443
DRR006520Root Summer glycyrrhizin high producing strain2.387
DRR006521Root Winter glycyrrhizin high producing strain6.862
DRR006522Root Winter glycyrrhizin high producing strain6.820
DRR006523Root Summer glycyrrhizin low producing strain5.845
DRR006524Root Summer glycyrrhizin low producing strain6.140
DRR006525Leaf Summer glycyrrhizin high producing strain0.456
DRR006526Leaf Summer glycyrrhizin high producing strain0.455

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)108.777
SRR2868004Drought Stress(Tissue:root)138.731
SRR2967015Control (Tissue:root)261.286

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.949
SRR9715740Leave8.439
SRR9715741Leave40.025
SRR9715739Root54.500
SRR9715742Root12.446
SRR9715743Root16.357

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h695.525
SRR8749028MeJA induced 9h955.675
SRR8749029MeJA induced 9h814.540
SRR8749030Uninduced885.761
SRR8749031Uninduced1466.176
SRR8749032Uninduced1953.186

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root61.252
SRR8400027Control-Root67.193

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved