Gene detail information of Glyur000300s00017257.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G62640.21.00E-1743-ketoacyl-acyl carrier protein synthase III
NRXP_003534651.10PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic-like [Glycine max]
COGYP_007109935.14.00E-1293-oxoacyl-(acyl-carrier-protein) synthase III [Geitlerinema sp. PCC 7407]
Swissprottr|P49243|FABH_ARATH03-oxoacyl-[acyl-carrier-protein] synthase III, chloroplastic (Precursor)
trEMBLtr|I1L735|I1L735_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G41380.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00300110997115642+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00648fabH EC:2.3.1.180 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0008152  metabolic process

GO:0008610  lipid biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0004315  3-oxoacyl-[acyl-carrier-protein] synthase activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000300s00017257.1PF08545.5ACP_syn_III1692482.60E-26
Glyur000300s00017257.1PF08541.5ACP_syn_III_C3093987.50E-38


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.264
SRR1783600control23.653
SRR1783602moderate drought stress16.036
SRR1811619moderate drought stress16.016

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.414
DRR006520Root Summer glycyrrhizin high producing strain18.932
DRR006521Root Winter glycyrrhizin high producing strain12.955
DRR006522Root Winter glycyrrhizin high producing strain12.663
DRR006523Root Summer glycyrrhizin low producing strain11.826
DRR006524Root Summer glycyrrhizin low producing strain11.779
DRR006525Leaf Summer glycyrrhizin high producing strain13.211
DRR006526Leaf Summer glycyrrhizin high producing strain13.013

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)43.191
SRR2868004Drought Stress(Tissue:root)29.523
SRR2967015Control (Tissue:root)27.951

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.108
SRR9715740Leave13.493
SRR9715741Leave12.726
SRR9715739Root18.974
SRR9715742Root14.948
SRR9715743Root14.991

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.130
SRR8749028MeJA induced 9h13.616
SRR8749029MeJA induced 9h16.629
SRR8749030Uninduced8.160
SRR8749031Uninduced8.050
SRR8749032Uninduced5.910

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.446
SRR8400027Control-Root51.049

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved