Gene detail information of Glyur000300s00017268.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80820.1 | 3.00E-35 | cinnamoyl coa reductase |
| NR | NP_001240058.1 | 1.33E-47 | uncharacterized protein LOC100789070 [Glycine max] |
| COG | YP_002015379.1 | 2.00E-06 | NAD-dependent epimerase/dehydratase [Prosthecochloris aestuarii DSM 271] |
| Swissprot | tr|Q9SAH9|CCR2_ARATH | 3.00E-41 | Cinnamoyl-CoA reductase 2 |
| trEMBL | tr|I1MCB2|I1MCB2_SOYBN | 3.00E-49 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G00600.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00300 | 192321 | 198583 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09753 | CCR | EC:1.2.1.44 | Phenylpropanoid biosynthesis | map00940 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 112.529 |
| SRR1783600 | control | 102.529 |
| SRR1783602 | moderate drought stress | 95.175 |
| SRR1811619 | moderate drought stress | 91.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 70.224 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 70.448 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 53.407 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 50.198 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 73.480 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 54.484 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.296 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 138.413 |
| SRR2868004 | Drought Stress(Tissue:root) | 143.585 |
| SRR2967015 | Control (Tissue:root) | 122.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 141.584 |
| SRR9715740 | Leave | 254.656 |
| SRR9715741 | Leave | 338.179 |
| SRR9715739 | Root | 129.087 |
| SRR9715742 | Root | 241.300 |
| SRR9715743 | Root | 215.528 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 74.266 |
| SRR8749028 | MeJA induced 9h | 64.407 |
| SRR8749029 | MeJA induced 9h | 40.296 |
| SRR8749030 | Uninduced | 62.315 |
| SRR8749031 | Uninduced | 54.175 |
| SRR8749032 | Uninduced | 78.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 195.922 |
| SRR8400027 | Control-Root | 119.346 |